Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FDP16_RS09030 Genome accession   NZ_CP040798
Coordinates   1814978..1816735 (-) Length   585 a.a.
NCBI ID   WP_176799401.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain CGMH058     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1802812..1818491 1814978..1816735 within 0
IScluster/Tn 1808450..1814780 1814978..1816735 flank 198


Gene organization within MGE regions


Location: 1802812..1818491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS08985 (FDP16_09365) secA 1802812..1805331 (-) 2520 WP_176799395.1 preprotein translocase subunit SecA -
  FDP16_RS08990 (FDP16_09375) - 1805541..1807823 (-) 2283 WP_176799396.1 carbohydrate-binding domain-containing protein -
  FDP16_RS08995 (FDP16_09380) tnpA 1808450..1808923 (-) 474 WP_176799397.1 IS200/IS605 family transposase -
  FDP16_RS09000 (FDP16_09385) - 1809622..1810263 (+) 642 Protein_1765 IS110 family transposase -
  FDP16_RS09005 (FDP16_09390) - 1810339..1811444 (+) 1106 WP_176799398.1 IS3 family transposase -
  FDP16_RS11945 - 1811701..1812003 (-) 303 WP_256254228.1 hypothetical protein -
  FDP16_RS09015 (FDP16_09405) - 1812205..1812846 (-) 642 WP_176799399.1 lantibiotic ABC transporter permease -
  FDP16_RS09020 (FDP16_09410) queG 1813036..1814217 (+) 1182 WP_176799400.1 tRNA epoxyqueuosine(34) reductase QueG -
  FDP16_RS09025 (FDP16_09420) tnpA 1814316..1814780 (-) 465 WP_176798194.1 IS200/IS605 family transposase -
  FDP16_RS09030 (FDP16_09425) rcrQ 1814978..1816735 (-) 1758 WP_176799401.1 ABC transporter ATP-binding protein Regulator
  FDP16_RS09035 (FDP16_09430) rcrP 1816725..1818491 (-) 1767 WP_176799402.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64510.50 Da        Isoelectric Point: 4.9305

>NTDB_id=367237 FDP16_RS09030 WP_176799401.1 1814978..1816735(-) (rcrQ) [Streptococcus sanguinis strain CGMH058]
MENKKPSLFSQIRPYLKGFQLPLALAFVGAVLSNIITVYGPNKLKEITNLISEGLATNIDLKAVSQIALLLTVLYAVGAL
LNYGQSFIISTVIQYFSKRLRTAIAEKINKLPLGYFDSHSQGDTLSRVTNDVDTVGQSLNQSLGNVISSILLLVAVVLTM
FFMNWILALVTILATVVGFVFVGLIMGKSQGYFTAQQNDLAAVNGYVEEMYSGHNVVTSYNAIEQSKERFAVLNHNLYNS
IWKSQFISSMMMPLMFFTGNFAYVLVILVGAALAINGSISIGIIVAFMVYVRTFSQPLSQIAQGIAVLQQAGAALVRVFE
FLAEPDMEDDQHKEQQLTAVKGDVAFEEVFFGYMPDQTIIHDFSAQAKAGQKIAIVGPTGAGKTTIVNLLMKFYEIDKGR
ISIDGIDIKDMKRSEVHDAFSMVLQDTWLFEGTIRENLIYNQEHVTDEAVVAAAKAVGVHHFIMTLPQGYDTVLDDTVNL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGN
HDELMAQNGFYADLYNSQFVEEDAG

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=367237 FDP16_RS09030 WP_176799401.1 1814978..1816735(-) (rcrQ) [Streptococcus sanguinis strain CGMH058]
ATGGAAAATAAGAAGCCTTCATTATTTAGCCAGATACGACCTTATCTCAAAGGCTTCCAGCTTCCTCTTGCTTTGGCATT
TGTGGGAGCTGTCTTGTCAAACATTATCACGGTCTATGGGCCAAATAAACTAAAAGAAATTACCAATCTCATCTCTGAAG
GTTTGGCTACCAATATTGATTTAAAAGCCGTGTCTCAGATTGCCCTTCTGCTGACCGTGCTCTATGCAGTTGGAGCCCTG
CTCAACTACGGGCAGTCTTTTATCATCAGTACGGTTATCCAGTATTTCTCTAAGCGGCTGCGGACGGCCATTGCAGAGAA
GATTAACAAGCTGCCGCTGGGCTATTTCGATAGTCATTCTCAGGGGGATACTCTGTCGCGCGTGACTAATGACGTAGATA
CGGTCGGCCAATCCCTCAATCAGAGTCTGGGAAATGTTATCTCTTCCATCCTGCTCTTGGTGGCTGTGGTTTTGACTATG
TTCTTCATGAACTGGATCTTGGCCTTGGTAACCATCTTGGCTACTGTAGTCGGCTTTGTCTTTGTCGGTCTCATCATGGG
CAAGTCTCAGGGCTATTTCACCGCCCAGCAAAACGATCTGGCTGCGGTAAACGGTTATGTGGAGGAGATGTACTCCGGCC
ATAATGTCGTTACCAGCTATAATGCCATTGAGCAGTCTAAGGAGCGCTTTGCAGTTCTCAATCATAATCTCTATAACAGT
ATTTGGAAGTCTCAATTTATTTCTAGCATGATGATGCCGCTCATGTTCTTTACGGGGAATTTTGCCTATGTGCTGGTTAT
TTTGGTCGGTGCTGCTCTGGCCATTAATGGCTCTATTAGCATCGGAATTATCGTCGCCTTTATGGTTTATGTGCGGACCT
TCTCTCAGCCTTTGTCACAGATTGCCCAAGGTATCGCCGTCTTGCAGCAGGCTGGTGCAGCACTGGTTCGTGTCTTTGAA
TTTCTAGCTGAGCCTGATATGGAAGACGACCAGCATAAAGAGCAGCAGCTTACTGCTGTCAAGGGAGATGTTGCCTTTGA
AGAGGTCTTCTTTGGCTACATGCCGGACCAGACGATTATTCATGATTTTTCAGCCCAGGCCAAAGCCGGACAGAAGATTG
CCATTGTCGGTCCGACGGGTGCTGGTAAGACAACTATCGTTAATCTCCTTATGAAGTTCTATGAAATTGACAAGGGACGT
ATCAGCATTGATGGTATAGATATTAAGGATATGAAACGCTCCGAGGTTCACGATGCCTTTTCAATGGTCTTGCAGGATAC
CTGGCTCTTTGAGGGAACTATCCGAGAGAACTTGATTTATAATCAGGAGCATGTGACGGATGAAGCAGTTGTTGCTGCAG
CGAAGGCGGTCGGTGTTCATCACTTTATCATGACGCTGCCGCAGGGCTATGATACAGTGCTGGATGACACGGTCAACTTA
TCAGTCGGTCAGAAGCAGCTATTGACAATCGCTCGTGCTCTGCTGAAAGATGCGCCGCTCTTGATCTTGGATGAGGCCAC
TTCGTCAGTCGATACGCGGACGGAGGAGCTGATTCAAAAGGCGATGGACAAACTCATGGAAGGCCGGACTTCCTTTGTCA
TTGCCCACCGCCTGTCCACTATCCGAAATGCAGATCTTATCTTGGTCATGCGCGATGGAAATATCATCGAGCAGGGCAAC
CACGATGAACTCATGGCTCAGAATGGCTTCTATGCGGACCTCTATAATAGTCAATTTGTAGAGGAAGATGCAGGTTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(24-298)

ABC transporter (ABC_tran)

(361-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

69.863

99.829

0.697

Multiple sequence alignment