Detailed information NTG0367226

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: GSF71_RS00965
• Genome accession: NZ_CP048116
• Coordinates: 202732..203985 (-)
• Length: 417 a.a.
• NCBI ID: WP_011374761.1
• Uniprot ID: Q38WR9
• Organism: Latilactobacillus sakei strain MBEL1397
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 197732..208985

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GSF71_RS00945	-	199144..199875 (-)	732	WP_016265207.1	amino acid ABC transporter ATP-binding protein	-
GSF71_RS00950	-	199868..201331 (-)	1464	WP_035148462.1	ABC transporter substrate-binding protein/permease	-
GSF71_RS09955	-	201466..201618 (+)	153	WP_011374758.1	SPJ_0845 family protein	-
GSF71_RS00955	-	201693..201986 (-)	294	WP_011374759.1	nucleoside triphosphate pyrophosphohydrolase family protein	-
GSF71_RS00960	yihA	201986..202585 (-)	600	WP_011374760.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
GSF71_RS00965	clpX	202732..203985 (-)	1254	WP_011374761.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
GSF71_RS00970	tig	204195..205490 (-)	1296	WP_011374762.1	trigger factor	-
GSF71_RS00975	tuf	205701..206891 (-)	1191	WP_016265209.1	elongation factor Tu	-
GSF71_RS00980	-	207114..208061 (-)	948	WP_162100798.1	hypothetical protein	-

Sequence

Protein

• Length: 417 a.a.
• Molecular weight: 45644.28 Da
• Isoelectric Point: 4.3589

>NTDB_id=367226 GSF71_RS00965 WP_011374761.1 202732..203985(-) (clpX) [Latilactobacillus sakei strain MBEL1397]
MLDDTETTNGPVTCSFCGKSQDQVKKIVAGPGVYICNECIDLCKEIIDEEFKDEAVNDLLEVPKPREILAILNDYVIGQT
EAKKALSVAVYNHYKRVNQMTVAEKGDTELQKSNIALIGPTGSGKTFLAQTLARILNVPFAIADATTLTEAGYVGEDVEN
ILLKLLQNADFDVDRAERGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPQQELIQIDT
TNILFIIGGAFDGIETIVKNRLGEKTIGFGSKAGQAVDENQSLMQQIVTEDLMQFGIIPEFIGRIPITAALEKLTEDDLV
RILTEPKNALVKQYSKLMALDDVELEFTPEALHAIAHLAIERNTGARGLRSIIEEVMMDMMFDVPSREDVVKVLVTKEAV
DGTAKPQLFLADGQEAS

Nucleotide

• Length: 1254 bp

>NTDB_id=367226 GSF71_RS00965 WP_011374761.1 202732..203985(-) (clpX) [Latilactobacillus sakei strain MBEL1397]
ATGTTAGATGATACAGAAACAACGAATGGCCCTGTTACTTGTTCGTTTTGTGGTAAATCACAAGATCAAGTAAAGAAGAT
TGTGGCCGGCCCTGGTGTTTATATCTGTAATGAATGTATCGATCTCTGTAAAGAAATTATCGATGAAGAATTTAAAGATG
AAGCTGTTAATGACTTATTAGAAGTACCAAAACCACGCGAAATTCTTGCAATTTTAAATGATTATGTCATTGGTCAAACA
GAAGCTAAAAAGGCGCTCTCAGTTGCCGTTTATAACCATTACAAACGTGTTAACCAAATGACAGTTGCCGAAAAAGGTGA
TACTGAACTTCAAAAGAGTAATATCGCTTTAATCGGGCCTACTGGCTCAGGTAAGACATTCTTAGCCCAAACCTTAGCAC
GGATCCTTAACGTCCCATTTGCGATTGCGGATGCCACGACGTTGACGGAAGCCGGTTATGTTGGTGAAGATGTTGAGAAT
ATTCTCTTGAAGCTCTTGCAAAACGCTGATTTTGATGTTGATCGCGCTGAACGGGGTATTATTTATATCGATGAAATTGA
TAAGATTGCCAAGAAGAGCGAAAACGTCTCAATTACCCGTGATGTTTCTGGTGAAGGGGTGCAACAAGCACTCTTGAAGA
TTCTTGAAGGGACAATTGCTAGCGTGCCACCTCAGGGCGGACGTAAGCACCCACAACAAGAATTGATTCAAATCGACACA
ACTAATATTTTATTCATTATTGGTGGGGCCTTCGATGGCATCGAAACAATCGTTAAAAACCGATTAGGTGAAAAGACGAT
TGGTTTTGGTAGCAAAGCTGGCCAAGCGGTTGATGAAAATCAAAGCTTGATGCAACAAATCGTGACGGAAGATTTAATGC
AATTTGGGATTATCCCTGAATTCATTGGTCGGATTCCAATCACGGCTGCACTTGAAAAATTAACTGAAGACGACTTAGTT
CGGATCTTAACGGAACCTAAGAACGCCTTAGTTAAACAATATAGTAAATTGATGGCTTTAGACGATGTTGAACTAGAATT
CACGCCAGAAGCATTACATGCGATTGCTCACCTTGCAATTGAACGTAATACCGGTGCGCGTGGCCTCCGTTCAATCATCG
AAGAAGTCATGATGGATATGATGTTTGATGTACCAAGTCGCGAAGACGTTGTCAAAGTCTTAGTGACAAAAGAAGCCGTT
GATGGCACTGCTAAACCACAACTTTTCTTAGCTGATGGTCAAGAAGCGTCATAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (314-391)

• ClpX C4-type zinc finger (zf-C4_ClpX) (13-49)

• AAA domain (Cdc48 subfamily) (AAA_2) (111-307)

3D structure

• AlphaFold DB: Q38WR9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	72.139	96.403	0.695
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	57.531	97.122	0.559