Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   FHE73_RS22875 Genome accession   NZ_CP040782
Coordinates   4407751..4410087 (-) Length   778 a.a.
NCBI ID   WP_089148268.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain HM-311     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4402751..4415087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHE73_RS22850 (FHE73_22850) - 4405398..4405741 (+) 344 Protein_4419 PH domain-containing protein -
  FHE73_RS22855 (FHE73_22855) - 4405786..4406853 (-) 1068 WP_089148269.1 AI-2E family transporter -
  FHE73_RS22860 (FHE73_22860) - 4407029..4407241 (+) 213 WP_000242539.1 hypothetical protein -
  FHE73_RS22865 (FHE73_22865) - 4407288..4407416 (-) 129 WP_001053553.1 YrzQ family protein -
  FHE73_RS22870 (FHE73_22870) - 4407435..4407623 (-) 189 WP_000469281.1 hypothetical protein -
  FHE73_RS22875 (FHE73_22875) recD2 4407751..4410087 (-) 2337 WP_089148268.1 ATP-dependent RecD-like DNA helicase Machinery gene
  FHE73_RS22880 (FHE73_22880) - 4410183..4410842 (-) 660 WP_000066405.1 tetratricopeptide repeat protein -
  FHE73_RS22885 (FHE73_22885) mnmA 4410952..4412067 (-) 1116 WP_001038010.1 tRNA 2-thiouridine(34) synthase MnmA -
  FHE73_RS22890 (FHE73_22890) - 4412084..4413229 (-) 1146 WP_089148267.1 cysteine desulfurase family protein -
  FHE73_RS22895 (FHE73_22895) - 4413265..4413681 (-) 417 WP_000704116.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87474.97 Da        Isoelectric Point: 5.2601

>NTDB_id=367146 FHE73_RS22875 WP_089148268.1 4407751..4410087(-) (recD2) [Bacillus thuringiensis strain HM-311]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNEIYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYMVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLVRETMSLLNNQEGRVTEEDIIGCIETMQSEGKVIIEEERVYLATLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLNVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQQVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVRSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=367146 FHE73_RS22875 WP_089148268.1 4407751..4410087(-) (recD2) [Bacillus thuringiensis strain HM-311]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAATATATGACGAAAAGAAAGTAATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACATTGACAGGTCACTTTAAGGACCATCCAAAGTATGGA
AAACAATATATGGTTGAAACATTTAAAAAAGAATTGCCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCTGAAAAAATTGTGGACCATCTCGGAGAACATGCTATTTCGAAAATTATGGATG
ACCCTGAGGCATTAAATGGTGTTGTTAATAAACAAAAGGCTCAGGAAATATATGAGACAATTGTTGAACATCAAGGGCTA
GAGAAAGTAATGAGCTTTTTAAATGGCTACGGTTTTGGAACGAAACTTTCTATTAAGATTTACCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCGTATCAACTTATCGAAGAAGTGGATGGGATTGGTTTTGGAAGAGCGGATGATA
TAGGGCGTGCGTTAGGGATATCGGGTAATCATGACGACCGTGTACGCGCAGGATGTTTTTACACATTAGAGAATGTCTCA
TTACAACTTGGTCACGTTTATATGAGGAAAGATCAACTTGTAAGAGAAACGATGTCACTTTTAAACAATCAAGAAGGAAG
AGTGACTGAGGAAGATATTATAGGTTGTATTGAAACGATGCAAAGCGAAGGGAAAGTCATCATAGAAGAAGAACGAGTGT
ATTTAGCAACGTTATTCTACTCTGAGAAAGGTGTTGTAAAGTCTATTCGCAGGCTTATGAATCAAGAAGAAACACCTTCA
TTTCCAGAAGCAGAAGTGTTAAAAACGTTAGGTGAAATTGAAGAACAACTGAACGTACAATATGCACCGTTTCAGCAAGA
AGCAATTCAAACGGCACTTCATAAACCGATGATGTTATTGACAGGTGGACCAGGAACAGGGAAAACAACAGTTATTAAAG
GGATTGTTGAAATGTATGCATCACTACACGGGTTATCGTTAAATCCGAATGAATACAGTGATGATAATCCATTTCCAATA
CTATTAACAGCTCCAACAGGAAGAGCAGCGAAGCGAATGAGTGAATCAACAGGACTTCCAGCTTGCACAATTCACCGTTT
ACTTGGTTGGACGCCAGAAGGATCGTTCCAGCGTAATGAAACGGATCCTGTCCAAGGTAAGCTCCTTATTATCGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTATTTAAGTCGTTGCCGACGAACATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAGTTGCCATCTGTAGGACCTGGACAAGTATTAAAAGATTTATTAAATGCAGGCGCAGTTCCGACAGTGAAGCT
TACTGAAATTTATCGTCAAGCGGAAGGCTCATCAGTGATTCAACTTGCCCATGCGATAAAAAATGGAACCCTACCACCAG
ATTTAGCACAAAATCAAAAAGATCGTTCATTTATCGGCTGTACAGGAGCTCAAATTGTTGAGGTTGTGAAAAAAGTTTGT
GAAAATGCTAAAACAAAAGGCTTTAGCGCAAGAGATGTACAAGTATTAGCACCGATGTACCGCGGGCCTGCTGGTATTAA
TGTATTAAACGAAGCGCTGCAACAAGTATTTAATCCGAAGAGGGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTGT
ACCGAAGAGGCGATAAAGTACTGCAACTCGTGAATCAGCCGGAGAGCCAAGTGTTTAATGGTGATATTGGGGAAATTGTT
TCGGTGTTTTATGCGAAAGAAAACGTTGAGCAACAAGATATGATTATCGTTTCGTTTGATGGAATTGAGGTAACGTATAC
GAAGCCCGATTTAAATCAAATTACGCATGCATATTGTTGTTCCATTCATAAATCACAAGGTAGTGAATTTCCGATTGTTA
TTATGCCAATCGTGAGGAGTTACAACCGTATGTTACGTCGTAATTTAATTTACACGGGCATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGAGAGGAAGCAGCTTTCCAATCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACAACCTTAGC
TAGTCGCTTGCAAGAATCACAAGGAGAAGTACAGATGGTCACAGTTAATGGCGAGGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(341-548)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.89

100

0.578

Multiple sequence alignment