Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   FGL66_RS04460 Genome accession   NZ_CP040781
Coordinates   945769..948153 (+) Length   794 a.a.
NCBI ID   WP_180810387.1    Uniprot ID   A0A7H9DKN8
Organism   Staphylococcus sp. 17KM0847     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 940769..953153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL66_RS04440 (FGL66_04415) - 941566..942573 (-) 1008 WP_180810383.1 LLM class flavin-dependent oxidoreductase -
  FGL66_RS04445 (FGL66_04420) - 942784..943935 (+) 1152 WP_180810384.1 cysteine desulfurase family protein -
  FGL66_RS04450 (FGL66_04425) mnmA 943932..945044 (+) 1113 WP_180810385.1 tRNA 2-thiouridine(34) synthase MnmA -
  FGL66_RS04455 (FGL66_04430) - 945092..945766 (+) 675 WP_180810386.1 tetratricopeptide repeat protein -
  FGL66_RS04460 (FGL66_04435) recD2 945769..948153 (+) 2385 WP_180810387.1 ATP-dependent RecD-like DNA helicase Machinery gene
  FGL66_RS04465 (FGL66_04440) alaS 948409..951039 (+) 2631 WP_180810388.1 alanine--tRNA ligase -
  FGL66_RS04470 (FGL66_04445) - 951105..951377 (+) 273 WP_180810389.1 IreB family regulatory phosphoprotein -
  FGL66_RS04475 (FGL66_04450) ruvX 951370..951798 (+) 429 WP_180810390.1 Holliday junction resolvase RuvX -
  FGL66_RS04480 (FGL66_04455) - 951812..952135 (+) 324 WP_180810391.1 DUF1292 domain-containing protein -
  FGL66_RS04485 (FGL66_04460) - 952508..953152 (+) 645 WP_180810392.1 O-methyltransferase -

Sequence

Protein


Download         Length: 794 a.a.        Molecular weight: 89942.16 Da        Isoelectric Point: 4.4391

>NTDB_id=367091 FGL66_RS04460 WP_180810387.1 945769..948153(+) (recD2) [Staphylococcus sp. 17KM0847]
MENPTLFDYTYVKGEVMLILFQNEDNFYTVLKVEVDETNGDFDDEVTIVGYFPDIVEDETYTFKGHTVEHPRYGQQLKAE
TFQKELPQTKDSVIAYLSSALFKGIGVKTATTIVDTLGEDAIQQILNDASCLSKVPKLSKDKQQAIADQVYQNQESEQIM
IRLNDLGFGAKLAMDIYKFYQSDTLNVLDRNPYQLVYDIRGVGFNKADQLARQMGLHPTHSDRLRAGILFVVEETCIKNG
HTYLPTEALLNEAAQLLSKNIDIEIPYDAMETCLIQLVEEKKLINIDEVIAMPSLYYSELKSTQNLYKVAQHQQSLTQFE
LSDIQLHIGEIETQNEVSYATSQKEALECALQNKIMLLTGGPGTGKTTVIKGIVQLYAEMHGLSLDYDDYDEGEAFPIVL
AAPTGRASKRLNEATGLEAMTIHRLIGWNQETKPDDLLEHEIDARLIIIDEMSMVDTWLFHQFMNAVPIDAQVVLVGDED
QLPSVGPGQVFKDLIDSNVLPRINLTEVYRQQDGSSIIDLAHRMKLGQHVDITARYHDRSFIQCQTHQIPDIVDKVVTNA
VSKGYTMSDIQVLAPMYRGSAGIQRLNQVLQNILNPKGDEAHREIQFGDIVFRQGDKVLQLVNRPNDNVFNGDIGEIVGI
FWAKENELNKDILIVDYEGNEITYMKSDLLEITHAYCTSIHKSQGSEFPIVIMPIVKQYYRMLQKPILYTGLTRAKQSLV
FLGDPEAFNIGLHTNGQARLTQLQSFLETYFNVETAQDIQSDQLMLTEETMYRINPMINMGDITPYDFLEIDKV

Nucleotide


Download         Length: 2385 bp        

>NTDB_id=367091 FGL66_RS04460 WP_180810387.1 945769..948153(+) (recD2) [Staphylococcus sp. 17KM0847]
GTGGAAAACCCAACACTTTTTGATTATACATATGTTAAAGGCGAAGTGATGTTAATTCTTTTTCAAAATGAGGATAACTT
CTATACAGTATTAAAAGTGGAAGTTGATGAAACGAACGGAGACTTTGACGATGAGGTCACAATTGTTGGGTATTTTCCAG
ACATTGTAGAGGATGAAACTTATACTTTCAAAGGACATACGGTTGAGCATCCTCGATATGGTCAGCAACTCAAAGCAGAA
ACTTTTCAAAAAGAATTACCGCAAACGAAAGATTCCGTTATTGCTTATTTATCAAGTGCACTCTTCAAAGGAATTGGTGT
GAAAACAGCTACTACCATTGTGGATACATTAGGTGAAGATGCAATCCAACAAATTTTGAATGATGCCTCATGCTTATCCA
AAGTTCCTAAATTGTCTAAAGATAAGCAACAAGCGATAGCAGATCAAGTGTACCAGAACCAAGAGAGTGAACAAATTATG
ATTCGACTCAACGACCTTGGTTTTGGTGCAAAACTTGCGATGGATATTTATAAATTTTATCAAAGTGATACACTTAATGT
ATTGGATCGCAATCCTTATCAATTAGTCTATGATATTAGAGGTGTTGGTTTTAATAAAGCGGATCAGTTGGCACGACAGA
TGGGTCTACATCCCACACATTCAGATCGTTTACGGGCAGGGATTTTATTTGTTGTAGAAGAAACGTGTATTAAAAATGGT
CATACCTATTTACCAACAGAAGCGTTATTAAATGAAGCAGCACAATTATTATCTAAAAATATTGATATAGAAATCCCTTA
TGATGCAATGGAAACATGCCTTATTCAGTTGGTAGAAGAGAAAAAATTAATCAATATTGATGAAGTCATAGCGATGCCTA
GTTTATATTATTCTGAACTTAAAAGTACGCAGAATTTGTATAAAGTGGCACAACATCAACAATCATTAACTCAATTTGAG
TTATCAGATATACAGTTACATATTGGTGAGATTGAGACACAAAATGAAGTGAGCTATGCGACATCACAGAAAGAAGCATT
AGAATGTGCATTACAAAATAAAATAATGCTATTAACAGGTGGACCGGGTACTGGAAAAACAACAGTCATTAAAGGGATTG
TGCAACTTTATGCAGAGATGCATGGCTTATCATTGGATTACGATGATTACGATGAAGGAGAAGCCTTTCCTATTGTACTC
GCTGCGCCAACCGGTCGAGCTTCTAAACGTCTAAATGAAGCAACAGGCTTAGAAGCAATGACGATACATCGCTTAATCGG
CTGGAATCAAGAAACTAAACCCGATGATTTGTTGGAACATGAAATTGATGCACGATTAATTATTATTGATGAGATGTCAA
TGGTTGATACATGGCTGTTTCATCAGTTTATGAATGCTGTTCCGATTGATGCACAAGTCGTATTAGTAGGAGATGAAGAT
CAACTCCCGTCAGTCGGTCCCGGACAAGTGTTTAAAGATTTGATTGATTCTAATGTATTGCCAAGAATTAACCTCACAGA
AGTATATCGCCAACAAGATGGTTCAAGTATTATTGATTTAGCACATCGGATGAAGTTGGGGCAGCATGTCGATATTACAG
CACGTTATCATGACCGTTCCTTTATTCAATGTCAAACACACCAGATTCCAGATATTGTAGACAAAGTGGTAACGAATGCA
GTAAGCAAAGGCTATACGATGTCGGATATTCAAGTGTTAGCACCCATGTATCGTGGTAGTGCAGGCATCCAAAGATTAAA
TCAAGTATTGCAAAATATTTTAAATCCTAAAGGAGACGAAGCACATCGAGAAATTCAGTTCGGTGATATAGTGTTTCGTC
AAGGTGATAAAGTGCTTCAGCTTGTTAATCGTCCGAATGACAATGTGTTTAACGGTGATATTGGGGAGATAGTAGGTATA
TTTTGGGCAAAGGAGAATGAACTCAATAAAGATATACTGATTGTAGATTATGAAGGCAATGAAATTACATATATGAAATC
AGACTTACTTGAAATCACACATGCTTATTGTACTTCTATTCATAAGTCGCAAGGTTCAGAATTTCCTATTGTGATCATGC
CAATTGTAAAACAATATTATCGTATGCTACAAAAGCCTATTTTATATACAGGATTAACGCGTGCAAAGCAATCACTCGTC
TTTCTTGGAGATCCTGAAGCTTTTAATATAGGTTTACATACGAATGGACAAGCACGTTTAACGCAATTACAATCTTTTTT
AGAAACTTATTTTAATGTTGAGACAGCACAAGATATACAGTCAGATCAATTGATGTTGACAGAAGAAACGATGTATCGTA
TTAATCCAATGATCAATATGGGAGATATAACACCGTATGACTTTTTAGAAATTGACAAAGTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(339-546)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-721)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-657)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H9DKN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.191

98.866

0.496

Multiple sequence alignment