Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FED49_RS08200 Genome accession   NZ_CP040747
Coordinates   1573433..1574212 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain HQ-51-Ba     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1568433..1579212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED49_RS08180 trmFO 1569137..1570441 (+) 1305 WP_138825739.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FED49_RS08185 xerC 1570504..1571421 (+) 918 WP_007499616.1 tyrosine recombinase XerC -
  FED49_RS08190 hslV 1571436..1571981 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  FED49_RS08195 hslU 1571998..1573398 (+) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  FED49_RS08200 codY 1573433..1574212 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FED49_RS08205 flgB 1574501..1574890 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  FED49_RS08210 flgC 1574890..1575342 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  FED49_RS08215 fliE 1575354..1575671 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  FED49_RS08220 fliF 1575722..1577314 (+) 1593 WP_024720350.1 flagellar basal-body MS-ring/collar protein FliF -
  FED49_RS08225 fliG 1577326..1578342 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  FED49_RS08230 fliH 1578335..1579099 (+) 765 WP_138825741.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=366943 FED49_RS08200 WP_007499612.1 1573433..1574212(+) (codY) [Bacillus altitudinis strain HQ-51-Ba]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=366943 FED49_RS08200 WP_007499612.1 1573433..1574212(+) (codY) [Bacillus altitudinis strain HQ-51-Ba]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTGCCAATCATCGGAGGCGGGGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGACGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTTTCATATAGTGAACTTGAAGCGAT
TGAACATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATTAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment