Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GSS61_RS15515 Genome accession   NZ_CP047985
Coordinates   3278237..3278962 (-) Length   241 a.a.
NCBI ID   WP_025525994.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain HZ-52     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3273237..3283962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSS61_RS15490 (GSS61_16265) - 3274356..3274847 (+) 492 WP_025505527.1 type II secretion system protein M -
  GSS61_RS15495 (GSS61_16270) - 3274849..3275610 (+) 762 WP_029855938.1 type II secretion system protein N -
  GSS61_RS15500 (GSS61_16275) cysQ 3275896..3276723 (-) 828 WP_047123638.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GSS61_RS15505 (GSS61_16280) nudE 3276765..3277334 (-) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  GSS61_RS15510 (GSS61_16285) nfuA 3277555..3278139 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  GSS61_RS15515 (GSS61_16290) comF 3278237..3278962 (-) 726 WP_025525994.1 amidophosphoribosyltransferase Machinery gene
  GSS61_RS15520 (GSS61_16295) bioH 3279047..3279814 (+) 768 WP_029785296.1 pimeloyl-ACP methyl ester esterase BioH -
  GSS61_RS15525 (GSS61_16300) - 3279938..3280402 (+) 465 WP_005459035.1 hypothetical protein -
  GSS61_RS15530 (GSS61_16305) - 3280538..3282859 (-) 2322 WP_193239043.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27705.83 Da        Isoelectric Point: 8.7043

>NTDB_id=366793 GSS61_RS15515 WP_025525994.1 3278237..3278962(-) (comF) [Vibrio parahaemolyticus strain HZ-52]
MLSHHWQNIMHRVLSSQCGLCRFPIQATAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQQ
LFTLGDYDFPLSREVQRFKDHGQTWHVHALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQLPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=366793 GSS61_RS15515 WP_025525994.1 3278237..3278962(-) (comF) [Vibrio parahaemolyticus strain HZ-52]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
CACCGCTCAACCCAATGCTCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCTGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACAA
CTATTTACCTTGGGAGACTACGACTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCACGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCTACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

48.739

98.755

0.481