Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FGF61_RS16280 Genome accession   NZ_CP040698
Coordinates   3004166..3004780 (+) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain R47     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2999166..3009780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGF61_RS16260 (FGF61_16265) - 2999533..3001293 (-) 1761 WP_003035878.1 AAA family ATPase -
  FGF61_RS16265 (FGF61_16270) matP 3001479..3001931 (+) 453 WP_003035881.1 macrodomain Ter protein MatP -
  FGF61_RS16270 (FGF61_16275) ompA 3002023..3003081 (-) 1059 WP_003836839.1 porin OmpA -
  FGF61_RS16275 (FGF61_16280) sulA 3003439..3003948 (-) 510 WP_003035886.1 SOS-induced cell division inhibitor SulA -
  FGF61_RS16280 (FGF61_16285) sxy/tfoX 3004166..3004780 (+) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  FGF61_RS16285 (FGF61_16290) yccS 3004758..3006911 (-) 2154 WP_032939270.1 YccS family putative transporter -
  FGF61_RS16290 (FGF61_16295) - 3006930..3007376 (-) 447 WP_003035892.1 YccF domain-containing protein -
  FGF61_RS16295 (FGF61_16300) helD 3007502..3009556 (+) 2055 WP_138828357.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=366589 FGF61_RS16280 WP_003035889.1 3004166..3004780(+) (sxy/tfoX) [Citrobacter freundii strain R47]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=366589 FGF61_RS16280 WP_003035889.1 3004166..3004780(+) (sxy/tfoX) [Citrobacter freundii strain R47]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment