Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FGE23_RS13145 Genome accession   NZ_CP040672
Coordinates   2586483..2587262 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens strain X030     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2581483..2592262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE23_RS13125 trmFO 2582170..2583477 (+) 1308 WP_146276766.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FGE23_RS13130 xerC 2583547..2584464 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  FGE23_RS13135 hslV 2584480..2585025 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  FGE23_RS13140 hslU 2585042..2586445 (+) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  FGE23_RS13145 codY 2586483..2587262 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FGE23_RS13150 flgB 2587616..2588005 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  FGE23_RS13155 flgC 2588005..2588457 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  FGE23_RS13160 fliE 2588468..2588788 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  FGE23_RS13165 fliF 2588831..2590441 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  FGE23_RS13170 fliG 2590454..2591470 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  FGE23_RS13175 fliH 2591463..2592218 (+) 756 WP_146276768.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=366376 FGE23_RS13145 WP_003154263.1 2586483..2587262(+) (codY) [Bacillus amyloliquefaciens strain X030]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=366376 FGE23_RS13145 WP_003154263.1 2586483..2587262(+) (codY) [Bacillus amyloliquefaciens strain X030]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGGGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment