Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   FFX45_RS12560 Genome accession   NZ_CP040671
Coordinates   2556990..2557352 (-) Length   120 a.a.
NCBI ID   WP_149821397.1    Uniprot ID   -
Organism   Thermosynechococcus sp. CL-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2551990..2562352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFX45_RS12535 (FFX45_12535) - 2552354..2553109 (+) 756 WP_149821387.1 MBL fold metallo-hydrolase -
  FFX45_RS12540 (FFX45_12540) - 2553112..2553603 (+) 492 WP_149821389.1 phosphate-starvation-inducible PsiE family protein -
  FFX45_RS12545 (FFX45_12545) - 2553580..2554440 (-) 861 WP_190278356.1 prephenate/arogenate dehydrogenase -
  FFX45_RS12550 (FFX45_12550) - 2554596..2555723 (+) 1128 WP_149821393.1 HhoA/HhoB/HtrA family serine endopeptidase -
  FFX45_RS12555 (FFX45_12555) - 2555725..2556987 (+) 1263 WP_149821395.1 phospholipid carrier-dependent glycosyltransferase -
  FFX45_RS12560 (FFX45_12560) pilH 2556990..2557352 (-) 363 WP_149821397.1 response regulator transcription factor Machinery gene
  FFX45_RS12565 (FFX45_12565) - 2557440..2558300 (-) 861 WP_149821399.1 energy-coupling factor ABC transporter ATP-binding protein -
  FFX45_RS12570 (FFX45_12570) cbiQ 2558302..2559090 (-) 789 WP_149821401.1 cobalt ECF transporter T component CbiQ -
  FFX45_RS12575 (FFX45_12575) - 2559098..2559403 (-) 306 WP_149821403.1 energy-coupling factor ABC transporter substrate-binding protein -
  FFX45_RS12580 (FFX45_12580) - 2559396..2560172 (-) 777 WP_190278110.1 energy-coupling factor ABC transporter permease -
  FFX45_RS12585 (FFX45_12585) - 2560410..2560715 (+) 306 WP_149821405.1 cell division protein SepF -
  FFX45_RS12590 (FFX45_12590) - 2560723..2561109 (+) 387 WP_149821407.1 hypothetical protein -
  FFX45_RS12595 (FFX45_12595) recF 2561048..2562187 (-) 1140 WP_149821409.1 DNA replication/repair protein RecF -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13460.72 Da        Isoelectric Point: 4.3603

>NTDB_id=366325 FFX45_RS12560 WP_149821397.1 2556990..2557352(-) (pilH) [Thermosynechococcus sp. CL-1]
MATIMIVDDSPTLRAMIVQLMKEQNYDVVEAEDGIEAQEKIKAQCPDLVILDVVMPRMNGYELCRWIKGEAACQSVPVIM
CTTKSEEFDIHWGKKQGVDAYITKPFDPAELIATVKQLLG

Nucleotide


Download         Length: 363 bp        

>NTDB_id=366325 FFX45_RS12560 WP_149821397.1 2556990..2557352(-) (pilH) [Thermosynechococcus sp. CL-1]
ATGGCTACAATTATGATTGTTGATGACAGCCCCACCCTGCGGGCAATGATTGTTCAGCTGATGAAAGAGCAGAACTATGA
CGTTGTTGAGGCCGAGGATGGTATCGAAGCCCAAGAAAAGATCAAGGCTCAATGTCCTGATTTGGTGATTCTGGATGTGG
TGATGCCGCGCATGAATGGTTACGAACTGTGCCGCTGGATTAAGGGTGAAGCGGCTTGCCAAAGTGTGCCCGTGATCATG
TGCACCACCAAAAGCGAAGAGTTTGATATTCACTGGGGTAAAAAGCAGGGGGTGGATGCCTACATCACCAAACCCTTTGA
TCCTGCAGAACTCATTGCCACTGTTAAACAACTCCTAGGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

54.622

99.167

0.542
  micA Streptococcus pneumoniae Cp1015

41.176

99.167

0.408
  chpA Acinetobacter baumannii strain A118

40.517

96.667

0.392
  vicR Streptococcus mutans UA159

38.655

99.167

0.383
  pilG Acinetobacter baumannii strain A118

39.474

95

0.375

Multiple sequence alignment