Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   M594_RS07525 Genome accession   NZ_CP047883
Coordinates   1538799..1539587 (-) Length   262 a.a.
NCBI ID   WP_000940721.1    Uniprot ID   A0A387B1W9
Organism   Streptococcus mitis strain S022-V3-A4     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1533799..1544587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M594_RS07500 (M594_07525) vex3 1534440..1535819 (-) 1380 WP_173876406.1 ABC transporter permease subunit Vex3 -
  M594_RS07505 (M594_07530) vex2 1535870..1536517 (-) 648 WP_000173725.1 ABC transporter ATP-binding subunit Vex2 -
  M594_RS07510 (M594_07535) - 1536644..1537921 (-) 1278 WP_173876407.1 ABC transporter permease -
  M594_RS07520 (M594_07545) - 1538224..1538799 (-) 576 WP_173876408.1 cysteine hydrolase family protein -
  M594_RS07525 (M594_07550) codY 1538799..1539587 (-) 789 WP_000940721.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  M594_RS07530 (M594_07555) - 1539843..1541417 (-) 1575 WP_173876409.1 DEAD/DEAH box helicase -
  M594_RS07535 (M594_07560) - 1541747..1543063 (+) 1317 WP_173876410.1 FAD-containing oxidoreductase -
  M594_RS07540 (M594_07565) murT 1543162..1544505 (+) 1344 WP_173876411.1 lipid II isoglutaminyl synthase subunit MurT -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29661.97 Da        Isoelectric Point: 5.2394

>NTDB_id=366325 M594_RS07525 WP_000940721.1 1538799..1539587(-) (codY) [Streptococcus mitis strain S022-V3-A4]
MAHLLEKTRKITSILKRSDEQLQEELPYNAITRQLADIIDCNACIVNSKGRLLGYFMRYKTNTDRVEQFFQTKIFPDDYI
QGANMIYDTEANLTVDHDLSIFPVESRADFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFEDEDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLISDIFEEVKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=366325 M594_RS07525 WP_000940721.1 1538799..1539587(-) (codY) [Streptococcus mitis strain S022-V3-A4]
ATGGCACATTTATTAGAAAAAACTAGAAAAATTACTTCTATCCTGAAGCGCTCAGACGAGCAGTTGCAGGAAGAACTTCC
CTACAATGCGATTACCCGTCAATTGGCAGATATTATTGACTGTAACGCCTGTATCGTCAATAGCAAGGGACGTCTCCTTG
GCTATTTTATGCGTTACAAAACCAATACAGATCGTGTAGAGCAATTCTTCCAAACTAAAATTTTCCCGGATGACTACATT
CAAGGTGCGAACATGATCTACGATACAGAAGCCAATCTGACAGTTGATCATGATTTAAGTATTTTTCCTGTGGAAAGTCG
TGCCGACTTTCCAGACGGTTTGACGACTATTGCACCGATTCATGTATCAGGGATTCGCCTTGGTTCTTTGATTATTTGGC
GTAATGATAAAAAATTCGAAGACGAGGACTTGATTCTTGTTGAGATTGCGAGTACCGTTGTTGGGATTCAACTCCTCAAC
TTCCAGCGTGAAGAAGATGAGAAAAATATCCGTCGCCGTACTGCTGTTACCATGGCGGTTAATACTCTGTCTTACTCCGA
ACTTCGTGCTGTTTCAGCCATTTTAGGGGAATTAAATGGAAATGAAGGGCAGTTGACTGCGTCTGTGATTGCAGACCGTA
TTGGAATAACCCGTTCTGTGATTGTCAATGCTCTTCGTAAACTTGAGTCTGCAGGAATTATTGAAAGTCGCTCACTTGGA
ATGAAGGGAACCTATCTTAAGGTCTTGATTTCAGATATTTTTGAAGAAGTGAAGAAAAGAGATTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A387B1W9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.595

100

0.626
  codY Bacillus subtilis subsp. subtilis str. 168

48.78

93.893

0.458

Multiple sequence alignment