Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   M594_RS00715 Genome accession   NZ_CP047883
Coordinates   152580..154346 (+) Length   588 a.a.
NCBI ID   WP_173875715.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V3-A4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 147580..159346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M594_RS00695 (M594_00710) - 148059..148589 (+) 531 WP_042749927.1 ATPase AAA -
  M594_RS00700 (M594_00715) galU 148730..149629 (-) 900 WP_173875712.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  M594_RS00705 (M594_00720) - 149651..150667 (-) 1017 WP_173875713.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  M594_RS00710 (M594_00725) patA 150872..152578 (+) 1707 WP_173875714.1 multidrug efflux ABC transporter subunit PatA -
  M594_RS00715 (M594_00730) rcrQ 152580..154346 (+) 1767 WP_173875715.1 multidrug efflux ABC transporter subunit PatB Regulator
  M594_RS00720 (M594_00735) - 154590..155279 (+) 690 WP_001138351.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  M594_RS00725 (M594_00745) - 155450..156799 (+) 1350 WP_000018268.1 glucose-6-phosphate isomerase -
  M594_RS00730 (M594_00750) gltX 156927..158387 (+) 1461 WP_173875716.1 glutamate--tRNA ligase -
  M594_RS00735 (M594_00755) - 158401..158835 (+) 435 WP_049544510.1 cytidine deaminase family protein -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65615.14 Da        Isoelectric Point: 5.1391

>NTDB_id=366258 M594_RS00715 WP_173875715.1 152580..154346(+) (rcrQ) [Streptococcus mitis strain S022-V3-A4]
MKTVQFFWNYFKVYKLSFVVVILMIVLATLAQALFPVFSGQAVTELANLVQAYQDGNPELVWQSLSGIMVNLGLLVLVLF
ISSVIYMCLMTRVIAESTNEMRKGLFGKLARLTVSFFDRRQDGDILSRFTSDLDNILQAFNESLIQVMSNIVLYIGLILV
MFSRNVTLALITIASTPVAFLMLIFIVKMARKYTNLQQKEVGKLNAYMDESISGQKAVIVQGIQKDMMAGFLEQNERVRK
ATFKGRMFSGILFPVMNGMSLVNTAIVIFAGSAVLLNDKSIETSTALGLIVMFAQFSQQYYQPIIQVAASWGSLQLAFTG
AERIQEMFDAEEEIRPEKAPIFTKLQEGVEISHIDFSYLPDKPILKDVSISAPKGQMTAVVGPTGSGKTTIMNLINRFYD
VDAGGIYFDGKDIRNYDLDSLRSKVGIVLQDSVLFSGTIRDNIRFGVPDASQEMVEAAAKATHIHDYIESLPDRYDTLID
DDQSIFSTGQKQLISIARTLMTDPEVLILDEATSNVDTVTESKIQHAMEAVVAGRTSFVIAHRLKTILNADQIIVLKDGE
VIERGNHHELLKLGGFYSELYHNQFVFE

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=366258 M594_RS00715 WP_173875715.1 152580..154346(+) (rcrQ) [Streptococcus mitis strain S022-V3-A4]
ATGAAGACAGTTCAATTTTTTTGGAATTATTTTAAAGTCTATAAGCTATCATTTGTAGTTGTTATCCTGATGATTGTTCT
GGCAACTCTTGCCCAAGCCCTCTTTCCGGTCTTTTCTGGACAAGCGGTAACAGAGCTAGCCAATTTAGTTCAAGCTTATC
AAGATGGCAATCCAGAACTTGTTTGGCAAAGCCTATCAGGAATCATGGTCAATCTTGGTCTGCTGGTTTTGGTTTTATTT
ATTTCTAGTGTGATATACATGTGTCTCATGACGCGCGTGATTGCAGAGTCGACCAATGAGATGCGCAAAGGCCTCTTCGG
TAAGCTTGCTCGCTTGACAGTTTCTTTCTTTGACCGCCGACAAGATGGAGATATCCTGTCTCGTTTTACCAGTGATTTGG
ATAATATCCTCCAAGCCTTTAACGAAAGCTTGATTCAGGTCATGAGCAATATTGTTTTATACATTGGTCTGATTCTCGTC
ATGTTTTCGAGAAATGTGACGCTGGCCCTCATCACCATTGCCAGCACACCAGTGGCCTTCCTTATGCTGATTTTTATTGT
AAAAATGGCACGCAAATACACCAACCTCCAGCAAAAAGAGGTAGGGAAACTCAACGCCTATATGGACGAGAGTATTTCAG
GCCAAAAAGCCGTGATTGTGCAAGGAATTCAAAAGGATATGATGGCAGGATTTCTTGAACAAAATGAGCGCGTGCGCAAG
GCAACCTTTAAAGGAAGAATGTTCTCAGGAATTCTTTTCCCTGTCATGAATGGGATGAGCCTGGTTAATACAGCTATCGT
CATCTTTGCTGGTTCAGCTGTACTTTTGAATGATAAGTCTATTGAAACAAGTACAGCCCTAGGTTTGATTGTTATGTTTG
CCCAATTTTCACAGCAGTACTACCAGCCTATTATTCAAGTTGCGGCTAGTTGGGGAAGCCTTCAGTTAGCCTTTACAGGT
GCTGAACGGATTCAGGAAATGTTTGACGCAGAGGAAGAAATCCGACCTGAAAAGGCTCCAATCTTCACTAAGTTGCAAGA
AGGTGTTGAAATCAGTCATATTGATTTTTCATACCTGCCTGATAAACCTATTTTGAAAGATGTCAGCATTTCCGCTCCGA
AAGGCCAGATGACAGCGGTTGTTGGTCCGACAGGTTCAGGGAAAACGACTATTATGAACCTCATCAATCGCTTTTATGAT
GTTGATGCTGGTGGTATTTATTTTGACGGCAAAGACATCCGTAACTATGATTTAGATAGTCTTAGAAGCAAGGTGGGAAT
TGTTTTGCAGGATTCGGTCTTATTTAGTGGAACGATTCGAGACAATATCCGTTTCGGTGTGCCAGATGCTAGTCAAGAAA
TGGTTGAGGCAGCAGCCAAGGCAACCCACATTCACGACTATATTGAAAGTTTGCCTGATAGGTACGATACTCTTATAGAT
GATGATCAAAGCATCTTCTCGACAGGACAAAAGCAATTGATTTCTATCGCTCGAACCTTGATGACAGATCCAGAAGTTCT
CATTCTAGATGAAGCCACTTCAAACGTAGATACGGTGACAGAAAGCAAGATTCAGCATGCCATGGAGGCGGTTGTAGCAG
GCAGAACTAGTTTCGTCATTGCCCACCGCTTGAAAACCATTCTCAATGCAGACCAGATTATTGTCCTTAAAGATGGAGAA
GTCATTGAACGTGGTAATCACCATGAACTCTTGAAACTAGGTGGATTCTACTCAGAACTCTATCACAATCAATTTGTCTT
TGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(365-514)

ABC transporter transmembrane region (ABC_membrane)

(19-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

36.426

98.98

0.361

Multiple sequence alignment