Detailed information    

insolico Bioinformatically predicted

Overview


Name   endA   Type   Machinery gene
Locus tag   SMUNN2025_RS03120 Genome accession   NC_013928
Coordinates   611481..612362 (+) Length   293 a.a.
NCBI ID   WP_002264825.1    Uniprot ID   -
Organism   Streptococcus mutans NN2025     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 606481..617362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNN2025_RS03090 (SmuNN2025_0576) - 606666..607544 (+) 879 WP_002262941.1 F0F1 ATP synthase subunit gamma -
  SMUNN2025_RS03095 (SmuNN2025_0577) atpD 607570..608976 (+) 1407 WP_002264827.1 F0F1 ATP synthase subunit beta -
  SMUNN2025_RS03100 (SmuNN2025_0578) - 608990..609406 (+) 417 WP_002262939.1 F0F1 ATP synthase subunit epsilon -
  SMUNN2025_RS03105 (SmuNN2025_0579) - 609678..609911 (+) 234 WP_002285829.1 DUF1146 family protein -
  SMUNN2025_RS03110 (SmuNN2025_0580) murA 609977..611248 (+) 1272 WP_002262937.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SMUNN2025_RS03115 (SmuNN2025_0581) - 611251..611439 (+) 189 WP_002264826.1 DNA-directed RNA polymerase subunit beta -
  SMUNN2025_RS03120 (SmuNN2025_0582) endA 611481..612362 (+) 882 WP_002264825.1 DNA/RNA non-specific endonuclease Machinery gene
  SMUNN2025_RS03125 (SmuNN2025_0583) - 612430..613080 (-) 651 WP_002262934.1 amino acid ABC transporter permease -
  SMUNN2025_RS03130 (SmuNN2025_0584) - 613095..613799 (-) 705 WP_002262933.1 amino acid ABC transporter permease -
  SMUNN2025_RS03135 (SmuNN2025_0585) - 613817..614629 (-) 813 WP_002277521.1 transporter substrate-binding domain-containing protein -
  SMUNN2025_RS03140 (SmuNN2025_0586) - 614626..615408 (-) 783 WP_002262931.1 amino acid ABC transporter ATP-binding protein -
  SMUNN2025_RS03145 (SmuNN2025_0587) vicR 615761..616468 (+) 708 WP_002262930.1 response regulator YycF Regulator

Sequence


Protein


Download         Length: 293 a.a.        Molecular weight: 32157.75 Da        Isoelectric Point: 9.5337

>NTDB_id=36584 SMUNN2025_RS03120 WP_002264825.1 611481..612362(+) (endA) [Streptococcus mutans NN2025]
MTRKTNKSQRKQQKLCLSLLAALSVFVCTYIATSDHIADSNPIKQAAQLLTGKNKDILSNGSMSHQATPSQELANTVMTD
AVKNALGRQIEWSGAGSFIINHNKTDLNADVASQPYANNQTKIVQGQTVPTVANALLSKATRQYRNRQETGNGRTNWQPA
GWHQLYDLPGDYDHAVDRGHLLAYALVGGLKRFDASTSNPQNVATQAAWANEANSSNSRGQNYYETLIRKALDSHKRVRY
RVTLIYDDNNDILASGSHLEAKSSDGSLEFNVFIPNVQSGLTFDYATGQVKAN

Nucleotide


Download         Length: 882 bp        

>NTDB_id=36584 SMUNN2025_RS03120 WP_002264825.1 611481..612362(+) (endA) [Streptococcus mutans NN2025]
ATGACTAGAAAAACGAACAAGTCTCAGCGAAAACAGCAAAAATTATGCTTATCTCTCCTTGCTGCTTTGAGCGTATTTGT
TTGTACTTATATTGCAACCAGTGATCATATTGCTGATAGTAACCCTATAAAGCAGGCTGCCCAATTATTGACAGGTAAAA
ACAAGGATATACTTTCAAATGGTTCAATGAGCCATCAAGCGACTCCCAGTCAAGAATTAGCCAATACTGTTATGACGGAT
GCAGTAAAAAATGCCTTGGGTAGACAAATTGAATGGAGTGGTGCAGGTTCTTTCATTATTAATCATAATAAAACTGACCT
TAACGCTGATGTTGCTAGCCAACCGTATGCTAATAATCAGACCAAAATCGTTCAAGGACAGACAGTACCAACAGTAGCAA
ATGCTTTGTTAAGTAAGGCTACTCGTCAGTACCGAAACCGCCAAGAGACAGGAAATGGCAGGACAAATTGGCAGCCAGCA
GGCTGGCATCAGCTTTATGATTTGCCGGGTGACTATGATCACGCGGTTGATCGTGGACACTTATTGGCTTATGCTTTGGT
TGGTGGTTTGAAACGATTTGATGCTTCAACGAGTAATCCTCAAAATGTAGCAACACAAGCAGCTTGGGCTAATGAAGCCA
ATAGTTCAAACTCAAGGGGACAAAATTATTATGAAACACTGATTAGAAAAGCTTTGGATAGTCATAAGCGTGTTCGTTAT
CGTGTGACTCTTATCTATGATGACAACAATGATATCTTAGCCAGTGGCAGTCATCTAGAAGCCAAATCATCGGATGGCAG
TCTAGAGTTCAATGTCTTTATTCCTAATGTTCAAAGCGGTTTGACCTTTGATTATGCAACAGGACAAGTTAAGGCAAATT
AA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

64.103

79.863

0.512

  endA Streptococcus pneumoniae D39

64.103

79.863

0.512

  endA Streptococcus pneumoniae R6

64.103

79.863

0.512

  endA Streptococcus pneumoniae TIGR4

64.103

79.863

0.512


Multiple sequence alignment