Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   FBF22_RS06500 Genome accession   NZ_CP040618
Coordinates   1275438..1275953 (-) Length   171 a.a.
NCBI ID   WP_165433262.1    Uniprot ID   -
Organism   Campylobacter sp. CFSAN093260     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1270438..1280953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBF22_RS06485 (FBF22_06500) - 1270544..1272361 (-) 1818 WP_168940559.1 motility associated factor glycosyltransferase family protein -
  FBF22_RS06490 (FBF22_06505) - 1272358..1274181 (-) 1824 WP_052777759.1 motility associated factor glycosyltransferase family protein -
  FBF22_RS06495 (FBF22_06510) - 1274191..1275438 (-) 1248 WP_002896074.1 DUF2920 family protein -
  FBF22_RS06500 (FBF22_06515) ctsG 1275438..1275953 (-) 516 WP_165433262.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  FBF22_RS06505 (FBF22_06520) tsaD 1275954..1276961 (-) 1008 WP_002884179.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  FBF22_RS06510 (FBF22_06525) - 1276958..1278352 (-) 1395 WP_002853606.1 M99 family carboxypeptidase catalytic domain-containing protein -
  FBF22_RS06515 (FBF22_06530) dxr 1278354..1279424 (-) 1071 WP_002884178.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  FBF22_RS06520 (FBF22_06535) - 1279421..1280146 (-) 726 WP_002884177.1 phosphatidate cytidylyltransferase -
  FBF22_RS06525 (FBF22_06540) - 1280155..1280493 (-) 339 WP_002875268.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18708.59 Da        Isoelectric Point: 6.4682

>NTDB_id=365788 FBF22_RS06500 WP_165433262.1 1275438..1275953(-) (ctsG) [Campylobacter sp. CFSAN093260]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNTIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=365788 FBF22_RS06500 WP_165433262.1 1275438..1275953(-) (ctsG) [Campylobacter sp. CFSAN093260]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAACGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGTGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATACTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936

Multiple sequence alignment