Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   FBE87_RS06860 Genome accession   NZ_CP040613
Coordinates   1314222..1314737 (-) Length   171 a.a.
NCBI ID   WP_002799196.1    Uniprot ID   Q0P8R6
Organism   Campylobacter sp. CFSAN093246     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1309222..1319737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBE87_RS06845 (FBE87_06880) - 1309334..1311151 (-) 1818 WP_168940550.1 motility associated factor glycosyltransferase family protein -
  FBE87_RS06850 (FBE87_06885) - 1311148..1312971 (-) 1824 WP_168940551.1 motility associated factor glycosyltransferase family protein -
  FBE87_RS06855 (FBE87_06890) - 1312981..1314222 (-) 1242 WP_002864247.1 DUF2920 family protein -
  FBE87_RS06860 (FBE87_06895) ctsG 1314222..1314737 (-) 516 WP_002799196.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  FBE87_RS06865 (FBE87_06900) tsaD 1314738..1315745 (-) 1008 WP_002864246.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  FBE87_RS06870 (FBE87_06905) - 1315742..1317136 (-) 1395 WP_002869556.1 M99 family carboxypeptidase catalytic domain-containing protein -
  FBE87_RS06875 (FBE87_06910) dxr 1317138..1318208 (-) 1071 WP_002864243.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  FBE87_RS06880 (FBE87_06915) - 1318205..1318930 (-) 726 WP_002869557.1 phosphatidate cytidylyltransferase -
  FBE87_RS06885 (FBE87_06920) - 1318939..1319277 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.56 Da        Isoelectric Point: 6.4682

>NTDB_id=365706 FBE87_RS06860 WP_002799196.1 1314222..1314737(-) (ctsG) [Campylobacter sp. CFSAN093246]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=365706 FBE87_RS06860 WP_002799196.1 1314222..1314737(-) (ctsG) [Campylobacter sp. CFSAN093246]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTCGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942

Multiple sequence alignment