Detailed information
Bioinformatically predicted
Overview
| Name | comFA | Type | Machinery gene |
| Locus tag | LROSRS0_RS10260 | Genome accession | NZ_CP040576 |
| Coordinates | 2147318..2148655 (-) | Length | 445 a.a. |
| NCBI ID | WP_017262147.1 | Uniprot ID | A0A0R1RQZ3 |
| Organism | Furfurilactobacillus rossiae strain RS | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2135089..2177697 | 2147318..2148655 | within | 0 |
Gene organization within MGE regions
Location: 2135089..2177697
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LROSRS0_RS10205 (LROSRS0_1990) | pstB | 2135089..2135847 (-) | 759 | WP_017262158.1 | phosphate ABC transporter ATP-binding protein PstB | - |
| LROSRS0_RS10210 (LROSRS0_1991) | pstB | 2135868..2136686 (-) | 819 | WP_017262157.1 | phosphate ABC transporter ATP-binding protein PstB | - |
| LROSRS0_RS10215 (LROSRS0_1992) | pstA | 2136712..2137602 (-) | 891 | WP_017262156.1 | phosphate ABC transporter permease PstA | - |
| LROSRS0_RS10220 (LROSRS0_1993) | pstC | 2137602..2138522 (-) | 921 | WP_017262155.1 | phosphate ABC transporter permease subunit PstC | - |
| LROSRS0_RS10225 (LROSRS0_1994) | - | 2138548..2139426 (-) | 879 | WP_017262154.1 | phosphate ABC transporter substrate-binding protein PstS family protein | - |
| LROSRS0_RS10230 (LROSRS0_1995) | - | 2139912..2141285 (-) | 1374 | WP_017262153.1 | cell wall metabolism sensor histidine kinase WalK | - |
| LROSRS0_RS10235 (LROSRS0_1996) | - | 2141289..2141981 (-) | 693 | WP_017262152.1 | response regulator transcription factor | - |
| LROSRS0_RS10245 (LROSRS0_1998) | secA | 2143317..2145680 (-) | 2364 | WP_017262150.1 | preprotein translocase subunit SecA | - |
| LROSRS0_RS10250 (LROSRS0_1999) | hpf | 2145891..2146448 (-) | 558 | WP_017262149.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| LROSRS0_RS10255 (LROSRS0_2000) | - | 2146623..2147072 (-) | 450 | WP_225441805.1 | ComF family protein | - |
| LROSRS0_RS10260 (LROSRS0_2001) | comFA | 2147318..2148655 (-) | 1338 | WP_017262147.1 | DEAD/DEAH box helicase | Machinery gene |
| LROSRS0_RS10265 (LROSRS0_2002) | - | 2148740..2149384 (+) | 645 | WP_017262146.1 | YigZ family protein | - |
| LROSRS0_RS10270 (LROSRS0_2003) | - | 2149500..2150390 (-) | 891 | WP_017262145.1 | phosphate ABC transporter substrate-binding protein PstS family protein | - |
| LROSRS0_RS10275 (LROSRS0_2004) | - | 2150586..2152421 (-) | 1836 | WP_017262144.1 | APC family permease | - |
| LROSRS0_RS10280 (LROSRS0_2005) | - | 2152822..2153703 (+) | 882 | WP_017262143.1 | hypothetical protein | - |
| LROSRS0_RS10285 (LROSRS0_2006) | groL | 2154121..2155755 (-) | 1635 | WP_017262142.1 | chaperonin GroEL | - |
| LROSRS0_RS10290 (LROSRS0_2007) | groES | 2155826..2156110 (-) | 285 | WP_017262141.1 | co-chaperone GroES | - |
| LROSRS0_RS10295 (LROSRS0_2008) | - | 2156358..2157020 (-) | 663 | WP_017262140.1 | redox-sensing transcriptional repressor Rex | - |
| LROSRS0_RS10300 (LROSRS0_2009) | - | 2157389..2159347 (+) | 1959 | WP_017262139.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
| LROSRS0_RS10305 (LROSRS0_2010) | tsaD | 2159440..2160480 (-) | 1041 | WP_017262138.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| LROSRS0_RS10310 (LROSRS0_2011) | rimI | 2160647..2161108 (-) | 462 | WP_017262136.1 | ribosomal protein S18-alanine N-acetyltransferase | - |
| LROSRS0_RS10315 (LROSRS0_2012) | rimI | 2161101..2161709 (-) | 609 | WP_017262135.1 | ribosomal protein S18-alanine N-acetyltransferase | - |
| LROSRS0_RS10320 (LROSRS0_2013) | tsaB | 2161693..2162415 (-) | 723 | WP_017262134.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB | - |
| LROSRS0_RS10325 (LROSRS0_2014) | galE | 2162697..2163689 (-) | 993 | WP_017262133.1 | UDP-glucose 4-epimerase GalE | - |
| LROSRS0_RS10330 (LROSRS0_2015) | - | 2163773..2164549 (-) | 777 | WP_017262132.1 | acyl-[acyl-carrier-protein] thioesterase | - |
| LROSRS0_RS10335 (LROSRS0_2016) | rsmI | 2164550..2165437 (-) | 888 | WP_017262131.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| LROSRS0_RS10340 (LROSRS0_2017) | - | 2165452..2165802 (-) | 351 | WP_017262130.1 | DNA replication initiation control protein YabA | - |
| LROSRS0_RS10345 (LROSRS0_2018) | holB | 2165854..2166867 (-) | 1014 | WP_017262129.1 | DNA polymerase III subunit delta' | - |
| LROSRS0_RS10350 (LROSRS0_2019) | - | 2166896..2167225 (-) | 330 | WP_017262128.1 | cyclic-di-AMP receptor | - |
| LROSRS0_RS10355 (LROSRS0_2020) | tmk | 2167283..2167924 (-) | 642 | WP_017262127.1 | dTMP kinase | - |
| LROSRS0_RS10360 (LROSRS0_2021) | - | 2167992..2168900 (-) | 909 | WP_017262126.1 | glucosaminidase domain-containing protein | - |
| LROSRS0_RS10365 (LROSRS0_2022) | - | 2169047..2169292 (-) | 246 | WP_017262125.1 | YaaL family protein | - |
| LROSRS0_RS10370 (LROSRS0_2023) | recR | 2169362..2169961 (-) | 600 | WP_017262124.1 | recombination mediator RecR | - |
| LROSRS0_RS10375 (LROSRS0_2024) | - | 2169980..2170285 (-) | 306 | WP_017262123.1 | YbaB/EbfC family nucleoid-associated protein | - |
| LROSRS0_RS10380 (LROSRS0_2025) | dnaX | 2170339..2172264 (-) | 1926 | WP_017262122.1 | DNA polymerase III subunit gamma/tau | - |
| LROSRS0_RS10390 (LROSRS0_2026) | - | 2172601..2173098 (-) | 498 | WP_026017166.1 | deaminase | - |
| LROSRS0_RS10395 (LROSRS0_2027) | - | 2173112..2173729 (-) | 618 | WP_026017165.1 | class I SAM-dependent methyltransferase | - |
| LROSRS0_RS10400 | nrdH | 2173963..2174190 (+) | 228 | WP_017262119.1 | glutaredoxin-like protein NrdH | - |
| LROSRS0_RS10405 (LROSRS0_2029) | nrdE | 2174289..2176454 (+) | 2166 | WP_017262118.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| LROSRS0_RS10410 (LROSRS0_2030) | nrdF | 2176720..2177697 (+) | 978 | WP_017262117.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
Sequence
Protein
Download Length: 445 a.a. Molecular weight: 50281.49 Da Isoelectric Point: 10.4160
>NTDB_id=365432 LROSRS0_RS10260 WP_017262147.1 2147318..2148655(-) (comFA) [Furfurilactobacillus rossiae strain RS]
MNEELFGRQLTVTQLPPTFEPTDPRIVSRPAMTISGRWVRCERCHQQLEKAHVALPAGGYYCPDCLALGRITSRQSLLTI
PEPNAFPPQRNTLTWAGSLTRLQQICAQDVQSVFVKRKRHLLWAVTGAGKTEMLFLGLADALKRGDRVAVASPRVDVCIE
LFPRFQQAFTNTSMVLLHGQQTEPYRYCQFTVCTTHQLLRFYHAFDILVVDEVDAFPFAQNKQLMFAVDQAIKPNGACLY
LTATPGTELMHAVTRRQLTMSYLPLRFHGHLLPEIQCRGAWHWREKLRRGRLPTALQVAITARLRQHKRFLLFVPHVAQL
PDVAAAIRRFAPKASFVTVHAADGERVEKVAAMRQKKVDFLVTTTILERGVTFPDIDVLVLGADDAVFSTAALVQIAGRA
GRNAAAPDGKVIYWIEQTTLTLRRAIRQIQVVNQKGRRLPEWRHA
MNEELFGRQLTVTQLPPTFEPTDPRIVSRPAMTISGRWVRCERCHQQLEKAHVALPAGGYYCPDCLALGRITSRQSLLTI
PEPNAFPPQRNTLTWAGSLTRLQQICAQDVQSVFVKRKRHLLWAVTGAGKTEMLFLGLADALKRGDRVAVASPRVDVCIE
LFPRFQQAFTNTSMVLLHGQQTEPYRYCQFTVCTTHQLLRFYHAFDILVVDEVDAFPFAQNKQLMFAVDQAIKPNGACLY
LTATPGTELMHAVTRRQLTMSYLPLRFHGHLLPEIQCRGAWHWREKLRRGRLPTALQVAITARLRQHKRFLLFVPHVAQL
PDVAAAIRRFAPKASFVTVHAADGERVEKVAAMRQKKVDFLVTTTILERGVTFPDIDVLVLGADDAVFSTAALVQIAGRA
GRNAAAPDGKVIYWIEQTTLTLRRAIRQIQVVNQKGRRLPEWRHA
Nucleotide
Download Length: 1338 bp
>NTDB_id=365432 LROSRS0_RS10260 WP_017262147.1 2147318..2148655(-) (comFA) [Furfurilactobacillus rossiae strain RS]
ATGAATGAAGAATTATTTGGTCGTCAATTAACGGTCACACAATTGCCGCCGACTTTTGAACCAACAGATCCGCGAATCGT
GTCGCGACCTGCAATGACGATCAGCGGTCGGTGGGTTCGTTGTGAACGATGCCATCAGCAACTTGAAAAAGCTCATGTGG
CATTGCCAGCAGGCGGCTACTATTGTCCAGATTGCCTGGCACTGGGACGAATTACGAGTCGTCAGTCGTTACTGACAATT
CCTGAGCCCAATGCATTTCCGCCACAAAGGAACACACTGACGTGGGCGGGATCACTGACGCGATTACAACAAATTTGTGC
GCAGGATGTTCAGAGTGTCTTCGTCAAACGCAAGCGCCATTTGTTATGGGCGGTTACGGGGGCGGGCAAAACTGAGATGC
TGTTTTTGGGATTGGCAGATGCGCTCAAACGTGGTGATCGGGTAGCAGTTGCCTCACCGCGAGTAGACGTGTGTATTGAA
TTGTTTCCACGTTTTCAACAAGCGTTTACAAATACGTCAATGGTTTTGCTCCATGGTCAGCAAACGGAACCTTATCGATA
CTGCCAGTTTACCGTGTGTACGACGCATCAACTGCTTCGATTTTATCATGCTTTTGATATTTTGGTGGTTGATGAAGTTG
ATGCCTTTCCGTTTGCACAAAACAAGCAATTAATGTTTGCCGTTGATCAAGCCATTAAACCTAATGGTGCTTGCCTATAC
CTAACCGCCACACCGGGGACTGAACTGATGCACGCCGTGACTAGGCGGCAATTAACGATGAGTTACTTGCCGTTACGATT
TCATGGGCATCTGCTGCCTGAAATCCAGTGTCGAGGAGCGTGGCACTGGCGTGAAAAATTACGTCGTGGACGCTTACCGA
CGGCTCTGCAAGTTGCCATTACAGCCCGCCTGCGTCAGCACAAACGCTTTTTGCTTTTTGTCCCGCATGTGGCACAATTG
CCAGATGTTGCCGCGGCAATCAGACGCTTTGCACCCAAGGCGTCGTTTGTCACTGTTCATGCGGCAGATGGAGAACGGGT
TGAGAAGGTGGCTGCAATGCGTCAAAAGAAAGTGGATTTTTTAGTAACGACCACCATTTTGGAACGGGGAGTGACGTTTC
CGGACATTGATGTGTTGGTGCTAGGCGCTGACGACGCGGTTTTTTCCACGGCAGCGCTAGTGCAAATCGCCGGTCGTGCG
GGCAGAAACGCAGCGGCACCGGACGGGAAAGTTATTTATTGGATTGAACAAACAACGCTTACGCTGCGCCGGGCAATCCG
TCAGATTCAAGTTGTGAACCAAAAGGGAAGGCGGTTACCCGAATGGCGTCATGCCTGA
ATGAATGAAGAATTATTTGGTCGTCAATTAACGGTCACACAATTGCCGCCGACTTTTGAACCAACAGATCCGCGAATCGT
GTCGCGACCTGCAATGACGATCAGCGGTCGGTGGGTTCGTTGTGAACGATGCCATCAGCAACTTGAAAAAGCTCATGTGG
CATTGCCAGCAGGCGGCTACTATTGTCCAGATTGCCTGGCACTGGGACGAATTACGAGTCGTCAGTCGTTACTGACAATT
CCTGAGCCCAATGCATTTCCGCCACAAAGGAACACACTGACGTGGGCGGGATCACTGACGCGATTACAACAAATTTGTGC
GCAGGATGTTCAGAGTGTCTTCGTCAAACGCAAGCGCCATTTGTTATGGGCGGTTACGGGGGCGGGCAAAACTGAGATGC
TGTTTTTGGGATTGGCAGATGCGCTCAAACGTGGTGATCGGGTAGCAGTTGCCTCACCGCGAGTAGACGTGTGTATTGAA
TTGTTTCCACGTTTTCAACAAGCGTTTACAAATACGTCAATGGTTTTGCTCCATGGTCAGCAAACGGAACCTTATCGATA
CTGCCAGTTTACCGTGTGTACGACGCATCAACTGCTTCGATTTTATCATGCTTTTGATATTTTGGTGGTTGATGAAGTTG
ATGCCTTTCCGTTTGCACAAAACAAGCAATTAATGTTTGCCGTTGATCAAGCCATTAAACCTAATGGTGCTTGCCTATAC
CTAACCGCCACACCGGGGACTGAACTGATGCACGCCGTGACTAGGCGGCAATTAACGATGAGTTACTTGCCGTTACGATT
TCATGGGCATCTGCTGCCTGAAATCCAGTGTCGAGGAGCGTGGCACTGGCGTGAAAAATTACGTCGTGGACGCTTACCGA
CGGCTCTGCAAGTTGCCATTACAGCCCGCCTGCGTCAGCACAAACGCTTTTTGCTTTTTGTCCCGCATGTGGCACAATTG
CCAGATGTTGCCGCGGCAATCAGACGCTTTGCACCCAAGGCGTCGTTTGTCACTGTTCATGCGGCAGATGGAGAACGGGT
TGAGAAGGTGGCTGCAATGCGTCAAAAGAAAGTGGATTTTTTAGTAACGACCACCATTTTGGAACGGGGAGTGACGTTTC
CGGACATTGATGTGTTGGTGCTAGGCGCTGACGACGCGGTTTTTTCCACGGCAGCGCTAGTGCAAATCGCCGGTCGTGCG
GGCAGAAACGCAGCGGCACCGGACGGGAAAGTTATTTATTGGATTGAACAAACAACGCTTACGCTGCGCCGGGCAATCCG
TCAGATTCAAGTTGTGAACCAAAAGGGAAGGCGGTTACCCGAATGGCGTCATGCCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFA | Latilactobacillus sakei subsp. sakei 23K |
49.425 |
97.753 |
0.483 |
| comFA/cflA | Streptococcus pneumoniae TIGR4 |
36.674 |
98.652 |
0.362 |