Detailed information NTG0365175

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: BV455_RS13720
• Genome accession: NZ_CP040553
• Coordinates: 2704165..2706519 (+)
• Length: 784 a.a.
• NCBI ID: WP_017435571.1
• Uniprot ID: A0A023D9X8
• Organism: Saccharococcus caldoxylosilyticus strain ER4B
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2699165..2711519

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BV455_RS13695 (BV455_02775)	-	2699960..2700619 (+)	660	WP_017435566.1	YczE/YyaS/YitT family protein	-
BV455_RS13700 (BV455_02776)	cymR	2700630..2701046 (+)	417	WP_017435567.1	cysteine metabolism transcriptional regulator CymR	-
BV455_RS13705 (BV455_02777)	-	2701065..2702207 (+)	1143	WP_017435568.1	cysteine desulfurase family protein	-
BV455_RS13710 (BV455_02778)	mnmA	2702223..2703338 (+)	1116	WP_061579388.1	tRNA 2-thiouridine(34) synthase MnmA	-
BV455_RS13715 (BV455_02779)	-	2703484..2704146 (+)	663	WP_017435570.1	tetratricopeptide repeat protein	-
BV455_RS13720 (BV455_02780)	recD2	2704165..2706519 (+)	2355	WP_017435571.1	ATP-dependent RecD-like DNA helicase	Machinery gene
BV455_RS13725 (BV455_02781)	-	2706555..2707028 (+)	474	WP_042406361.1	PRC-barrel domain-containing protein	-
BV455_RS13730 (BV455_02782)	-	2707045..2707236 (+)	192	WP_015864601.1	hypothetical protein	-
BV455_RS13735 (BV455_02783)	-	2707249..2707383 (+)	135	WP_017435573.1	YrzQ family protein	-
BV455_RS13740 (BV455_02784)	-	2707480..2708541 (+)	1062	WP_017435574.1	AI-2E family transporter	-
BV455_RS13745 (BV455_02785)	alaS	2708865..2711498 (+)	2634	WP_017435575.1	alanine--tRNA ligase	-

Sequence

Protein

• Length: 784 a.a.
• Molecular weight: 87939.52 Da
• Isoelectric Point: 5.0604

>NTDB_id=365175 BV455_RS13720 WP_017435571.1 2704165..2706519(+) (recD2) [Saccharococcus caldoxylosilyticus strain ER4B]
MRQQESFALDEASFIKGTCVATIFHNEENFYSVIRVRVEETNEACEEQEVVVTGYFPKMNEQDTYIFYGKFHNHPRFGRQ
YVVEHFRKQFPNTKEGLIHYLASDLFKGIGKKTATAIVETLGENAISKILEDPSVLDGVPKLTKQKAKELYETLRTHEGL
EQTMIALSQFGFGPQLAMKIYQAYQEETLSIIQQNPYQLVEDVEGIGFGRADELGYQLGISGSHPARIRAACLFALEQDC
LQEGHVYITKDQLTAHVKQLLEAKRSETIRAETIEQMLVMLAEEGKLIEEEERFYIPSLYFAEKGIVTNVKRLLQQTEAV
MTFPESEFLLALGRLEERLSVQYAPLQKEAIRQALSSSLFILTGGPGTGKTTVIKGIVEIFADLHGLSLDPKDYTKDRPF
PILLAAPTGRAAKRMSEATGLPAVTIHRLLGWNGAEGFTHDEDEPISGRLLIVDEMSMVDTWLANQLFKSIPDGMQVILV
GDEDQLPSVGPGQVLKDLLRAGVVPTVRLTEVYRQAEGSSIIELAHQMKNGLVPSDLTAQKADRSFIRCQTGQVAEVVRQ
IADNARKKGFAVKDIQVLAPMYRGPAGIDRMNQVLQELFNPKSEKKRELSVGDVVYRVGDKVLQLVNQPEDNVFNGDIGE
IVAIFYAKENTEKQDLVVVSFDGIEVTYSRQDLSQITHAYCCSIHKAQGSEFPIVILPVVKSYYRMLKRNLLYTAVTRSK
QFLILCGEEEAFRLGVARSDDGTRQTTLAEKLQRFLAPFTEGELPMEDANIGMENVSPYDFMSS

Nucleotide

• Length: 2355 bp

>NTDB_id=365175 BV455_RS13720 WP_017435571.1 2704165..2706519(+) (recD2) [Saccharococcus caldoxylosilyticus strain ER4B]
TTGCGCCAACAGGAATCGTTTGCATTAGACGAAGCGTCGTTTATTAAAGGAACATGTGTTGCTACTATTTTCCATAACGA
GGAAAATTTTTATTCCGTCATCCGCGTCCGTGTGGAAGAAACGAATGAAGCATGTGAAGAACAAGAAGTAGTAGTGACCG
GATATTTTCCGAAAATGAACGAACAGGATACGTATATTTTTTATGGGAAATTTCACAACCATCCGAGATTTGGCCGGCAG
TACGTAGTCGAACATTTTCGCAAACAGTTCCCGAATACGAAAGAGGGACTCATTCATTATTTAGCGAGCGATTTATTTAA
AGGAATCGGAAAAAAAACGGCAACGGCCATCGTCGAAACGCTCGGGGAAAATGCCATTTCTAAAATTTTAGAGGATCCAA
GCGTATTAGATGGCGTTCCGAAATTAACGAAGCAAAAGGCGAAAGAATTGTATGAAACGCTGCGCACCCACGAAGGATTA
GAGCAAACGATGATCGCCCTTTCACAGTTTGGGTTTGGGCCGCAGTTAGCGATGAAAATTTATCAAGCATATCAAGAAGA
AACGCTTTCCATTATTCAGCAAAACCCATACCAGCTTGTTGAAGATGTTGAAGGAATTGGATTTGGCCGTGCTGATGAAT
TGGGATATCAGCTTGGCATTTCGGGAAGCCACCCAGCGCGGATTCGCGCCGCCTGTTTATTTGCGCTGGAACAGGATTGC
CTACAAGAGGGACATGTATATATAACGAAAGACCAACTGACAGCACATGTGAAGCAGCTTTTAGAAGCAAAGCGCAGTGA
AACAATCCGCGCCGAAACGATTGAGCAAATGTTGGTCATGCTTGCCGAGGAAGGCAAACTCATTGAGGAGGAGGAAAGGT
TTTACATTCCGTCACTTTATTTTGCCGAAAAAGGAATTGTGACAAATGTAAAACGCTTGCTGCAGCAAACGGAAGCGGTC
ATGACGTTTCCAGAATCGGAATTTTTACTGGCGCTCGGCAGATTGGAGGAGCGTTTGTCTGTACAATACGCTCCGCTGCA
AAAAGAAGCGATTCGCCAGGCGCTTTCCTCTTCGCTTTTTATTTTAACCGGCGGGCCCGGGACGGGGAAAACGACGGTCA
TTAAAGGGATCGTGGAAATATTTGCTGATTTGCATGGCCTTTCCCTTGATCCGAAAGACTATACGAAAGACCGTCCGTTT
CCGATTTTGCTTGCCGCACCAACGGGAAGAGCGGCAAAGCGAATGAGCGAGGCGACCGGGCTTCCCGCTGTAACGATTCA
CCGGCTGCTTGGCTGGAACGGAGCGGAAGGTTTTACGCATGACGAGGATGAACCGATTAGCGGCAGGCTTTTAATTGTTG
ATGAAATGTCAATGGTCGATACGTGGCTGGCGAATCAGCTGTTTAAATCGATTCCTGACGGCATGCAGGTGATTCTTGTT
GGCGATGAAGACCAGCTTCCATCAGTTGGGCCGGGACAAGTGTTAAAGGATTTGCTGAGGGCAGGAGTGGTGCCGACCGT
TCGCCTGACCGAAGTGTACCGGCAGGCGGAAGGATCATCGATTATTGAATTGGCCCACCAGATGAAAAACGGCCTCGTTC
CTTCCGATTTAACGGCCCAAAAAGCGGATCGCTCCTTTATCCGTTGCCAGACAGGACAAGTAGCCGAAGTAGTGCGGCAA
ATTGCCGATAATGCGCGCAAAAAAGGCTTTGCTGTAAAAGATATTCAAGTGCTCGCCCCAATGTACCGCGGACCTGCCGG
AATTGACCGGATGAATCAAGTGCTGCAAGAATTATTTAATCCAAAGTCTGAAAAAAAGCGGGAGCTTTCTGTCGGAGATG
TCGTGTACAGGGTCGGCGACAAAGTGCTGCAGCTTGTCAATCAGCCGGAAGATAACGTGTTTAACGGAGATATTGGTGAA
ATTGTCGCCATTTTTTACGCGAAAGAAAATACGGAAAAGCAGGATTTGGTCGTTGTTTCGTTTGATGGCATCGAGGTCAC
GTATTCGCGGCAAGACTTGTCGCAAATTACCCATGCCTATTGCTGTTCAATTCATAAAGCGCAAGGAAGCGAATTTCCAA
TTGTTATTTTGCCGGTTGTCAAAAGTTATTACCGCATGCTGAAGCGGAATTTGCTATATACCGCCGTGACAAGAAGCAAA
CAGTTTTTAATTTTATGCGGGGAGGAAGAGGCGTTTCGGCTCGGAGTCGCCCGCAGCGATGATGGGACGCGGCAGACGAC
GTTGGCGGAGAAATTGCAGCGGTTTCTCGCGCCATTTACCGAAGGAGAGCTGCCGATGGAAGATGCGAACATAGGGATGG
AAAACGTTTCACCGTATGATTTTATGAGCAGCTAG

Domains

Predicted by InterproScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (678-726)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (591-659)

• AAA domain (AAA_30) (343-551)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-247)

3D structure

• AlphaFold DB: A0A023D9X8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	62.673	100	0.634