Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   BV455_RS13630 Genome accession   NZ_CP040553
Coordinates   2682961..2685318 (+) Length   785 a.a.
NCBI ID   WP_042406379.1    Uniprot ID   -
Organism   Saccharococcus caldoxylosilyticus strain ER4B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2677961..2690318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV455_RS13615 (BV455_02760) - 2679114..2679407 (+) 294 WP_017435551.1 post-transcriptional regulator -
  BV455_RS13620 (BV455_02761) secDF 2679582..2681834 (+) 2253 WP_218687280.1 protein translocase subunit SecDF -
  BV455_RS13625 (BV455_02762) - 2682002..2682904 (+) 903 WP_081159667.1 cation diffusion facilitator family transporter -
  BV455_RS13630 (BV455_02763) recJ 2682961..2685318 (+) 2358 WP_042406379.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  BV455_RS13635 (BV455_02764) - 2685318..2685830 (+) 513 WP_017435555.1 adenine phosphoribosyltransferase -
  BV455_RS13640 (BV455_02765) - 2686020..2688218 (+) 2199 WP_017435556.1 RelA/SpoT family protein -
  BV455_RS13645 (BV455_02766) dtd 2688233..2688691 (+) 459 WP_042406375.1 D-aminoacyl-tRNA deacylase -
  BV455_RS13650 (BV455_02767) - 2688776..2688961 (+) 186 WP_143420788.1 hypothetical protein -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87700.08 Da        Isoelectric Point: 6.2616

>NTDB_id=365174 BV455_RS13630 WP_042406379.1 2682961..2685318(+) (recJ) [Saccharococcus caldoxylosilyticus strain ER4B]
MLIAKTRWDVKHPDEHIVKHLAEQLHIDPLIAKLLVHRGVCTAKEADAFLHPLKQPFHDPFLLDGMERAIARINRAIRQG
ESILVYGDYDADGVCSTTVMVSALKEAGAVVDFYIPNRFTEGYGPNEAAFRRAKEQGVSLIVTVDNGIAAVKEVALANEL
GMDIIVTDHHEPGPVLPEAYEIIHPKKPGSTYPFRELAGVGVAFKVAHALLGDVPRHLLDVVAIGTIADLVPLTGENRLL
AAQGLEELRRTKRIGLRALWQQCRIEAKEINEQTVGFVIAPRMNAVGRLGGADPAVRLLMTEDEAEAKRLAKEMDDLNRE
RQQLVAEIAEEAAQIVREQFPPARHKVLVVAKEGWNPGVIGIVASRLVEQFYRPTIVLSIDAEKGIAKGSARSIHGFDLF
ASLSTCRDILPHFGGHPMAAGMTLSIDHIDELRQRLNALADETLSDDDFTPITVVDAVCSVSDLTLSAAEQLEQFAPFGV
GNAKPLFLIENVSVEMMRRIGADQSHLKAVFAENGATVDGIGFGFGHLYDEIAPDAKVSVVGELAVNEWNGLRKPQLVIY
DVAVRECQLFDVRGQRDIRSLIASLPKEKRLLIMFRKETEQLADMALFKDELHYIHSSEEAAALCLDGRYVVLLDLPPSL
QILKMLLRSSLPARIYAVFYQREIHFFRTLPTRDHFKWFYAFLRKQGVFHIAKHGGQLARARGWTEETVHFMAKVFLELE
FITERNGVISLIPQPAKRDLNESPTYRLKQAQLELENLLLYSTYEQLKRCLFEMKGSQTYEEANV

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=365174 BV455_RS13630 WP_042406379.1 2682961..2685318(+) (recJ) [Saccharococcus caldoxylosilyticus strain ER4B]
ATGTTAATAGCAAAAACGCGTTGGGATGTGAAGCATCCTGACGAACATATCGTTAAACATTTAGCAGAACAGTTGCACAT
CGACCCGCTGATTGCCAAGCTTCTTGTGCATCGCGGCGTTTGTACGGCAAAAGAGGCAGACGCTTTTTTGCATCCGCTCA
AGCAGCCGTTTCATGATCCATTTTTGCTCGATGGAATGGAACGGGCGATTGCGAGGATAAATCGGGCGATACGGCAAGGC
GAGTCTATTTTAGTATACGGTGACTATGATGCCGATGGTGTATGCAGCACGACTGTCATGGTTAGCGCTTTAAAAGAAGC
CGGTGCTGTTGTTGATTTTTACATTCCCAATCGCTTTACCGAAGGATACGGTCCGAATGAAGCCGCTTTTCGCCGCGCGA
AGGAGCAAGGAGTTTCTCTTATTGTTACGGTGGATAATGGCATCGCGGCGGTGAAGGAAGTGGCCCTTGCCAATGAGCTT
GGCATGGACATTATTGTGACCGACCATCATGAGCCGGGACCGGTGTTGCCGGAAGCGTATGAAATTATTCATCCAAAAAA
ACCTGGAAGTACATATCCGTTTCGTGAACTAGCCGGCGTCGGGGTAGCGTTTAAAGTTGCCCATGCATTGCTTGGGGATG
TTCCGCGCCATTTATTGGATGTCGTCGCCATTGGGACGATCGCTGATTTGGTGCCTTTGACGGGGGAAAACCGCTTGCTG
GCTGCGCAAGGACTTGAAGAACTGCGCCGCACGAAGCGCATCGGCTTGCGCGCCTTATGGCAGCAGTGCAGGATAGAAGC
GAAGGAAATCAACGAACAGACGGTTGGCTTTGTGATCGCGCCGCGAATGAATGCGGTTGGACGTTTAGGCGGAGCGGACC
CGGCTGTAAGGCTGCTCATGACCGAGGATGAAGCGGAAGCGAAAAGGCTGGCGAAAGAAATGGATGACCTTAATCGCGAA
CGCCAGCAGTTAGTAGCTGAAATAGCGGAAGAAGCGGCGCAAATCGTTCGTGAACAGTTTCCGCCGGCCAGGCATAAAGT
GCTTGTCGTGGCGAAAGAAGGATGGAATCCGGGGGTCATCGGCATCGTTGCTTCCCGGCTAGTCGAACAATTTTACCGGC
CAACGATCGTTTTAAGCATTGATGCTGAAAAAGGAATTGCCAAAGGCTCAGCGCGAAGCATTCATGGTTTTGATCTCTTT
GCCAGCTTATCGACATGCCGTGATATCTTGCCGCATTTTGGCGGCCACCCAATGGCAGCTGGAATGACGTTATCGATCGA
CCATATTGACGAATTGCGGCAGCGCCTGAACGCTCTTGCCGATGAAACGTTGTCAGACGATGATTTCACTCCGATTACGG
TCGTCGATGCGGTTTGTTCCGTCTCCGATTTAACGCTGTCGGCAGCCGAACAGCTGGAACAATTCGCCCCGTTTGGCGTT
GGCAATGCGAAGCCGCTTTTTTTAATTGAAAATGTTTCCGTCGAAATGATGCGCCGCATCGGCGCCGATCAATCTCATTT
AAAGGCGGTTTTTGCCGAAAATGGCGCCACTGTTGATGGCATTGGGTTTGGATTTGGTCATCTATATGATGAAATCGCTC
CAGATGCAAAAGTGTCTGTTGTCGGCGAATTAGCCGTAAATGAGTGGAATGGATTGCGCAAGCCGCAGCTGGTGATTTAT
GACGTCGCCGTGCGCGAATGCCAATTATTTGACGTTCGCGGCCAAAGGGATATCCGTTCCCTCATTGCATCGCTTCCGAA
AGAAAAACGGCTGCTCATTATGTTTCGCAAAGAAACGGAACAGCTTGCAGATATGGCATTATTTAAGGATGAATTGCATT
ATATTCATTCCAGCGAAGAAGCGGCAGCTCTTTGCTTGGACGGCCGCTATGTAGTGCTATTGGATCTGCCTCCGTCATTA
CAAATATTAAAAATGTTGTTGCGTTCTAGTTTACCTGCGCGCATTTATGCGGTATTCTATCAAAGGGAGATTCATTTTTT
CCGCACGCTGCCGACGCGCGACCATTTTAAATGGTTTTATGCATTTTTACGAAAGCAAGGCGTGTTTCATATCGCCAAAC
ATGGCGGTCAATTGGCGCGTGCACGTGGATGGACGGAAGAAACCGTCCACTTTATGGCAAAAGTATTTTTAGAGCTCGAA
TTTATTACCGAACGCAACGGAGTGATATCGCTTATTCCGCAGCCGGCAAAGCGTGACTTAAACGAATCGCCGACGTATCG
TCTAAAACAAGCTCAGCTGGAGCTGGAAAATCTTCTTTTGTATTCAACTTACGAACAATTAAAGCGTTGTCTTTTCGAAA
TGAAAGGGTCGCAAACATACGAGGAGGCAAATGTGTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

DHH family (DHH)

(83-226)

RecJ OB domain (RecJ_OB)

(455-561)

DHHA1 domain (DHHA1)

(305-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.406

99.745

0.543

Multiple sequence alignment