Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   BCPR1_RS05760 Genome accession   NZ_CP040515
Coordinates   1109407..1111746 (+) Length   779 a.a.
NCBI ID   WP_070806869.1    Uniprot ID   A0AAJ1K0K5
Organism   Bacillus paranthracis strain PR1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1104407..1116746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCPR1_RS05745 (BCPR1_05745) - 1105440..1105724 (+) 285 WP_000886980.1 post-transcriptional regulator -
  BCPR1_RS05750 (BCPR1_05750) secDF 1105994..1108258 (+) 2265 WP_138321068.1 protein translocase subunit SecDF -
  BCPR1_RS05755 (BCPR1_05755) - 1108412..1109305 (+) 894 WP_014481757.1 cation diffusion facilitator family transporter -
  BCPR1_RS05760 (BCPR1_05760) recJ 1109407..1111746 (+) 2340 WP_070806869.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  BCPR1_RS05765 (BCPR1_05765) - 1111794..1112306 (+) 513 WP_000346219.1 adenine phosphoribosyltransferase -
  BCPR1_RS05770 (BCPR1_05770) relA 1112517..1114700 (+) 2184 WP_001262814.1 GTP diphosphokinase -
  BCPR1_RS05775 (BCPR1_05775) - 1114718..1115158 (+) 441 WP_001266956.1 D-tyrosyl-tRNA(Tyr) deacylase -
  BCPR1_RS05780 (BCPR1_05780) - 1115289..1115980 (+) 692 Protein_1102 alpha/beta hydrolase -
  BCPR1_RS27635 - 1116177..1116353 (+) 177 WP_001242605.1 hypothetical protein -

Sequence

Protein


Download         Length: 779 a.a.        Molecular weight: 88146.71 Da        Isoelectric Point: 4.9280

>NTDB_id=364860 BCPR1_RS05760 WP_070806869.1 1109407..1111746(+) (recJ) [Bacillus paranthracis strain PR1]
MLQPKTRWKEKEYNSERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTENQEFHDPFLLEGMDRTVERVNKAIQNG
EQILIFGDYDADGVSSTTVLYIALQELGADVEFYIPNRFTEGYGPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKEL
GIDLIITDHHEPPPQLPEALAIIHPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPEHLLEIAVIGTVADLVSLHGENRLL
VKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDATPAVHLLLSEDPEEAKELAEEIDELNKL
RKDIVKQITEEAIAEVETNFPPEDNKVLVLAKEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDLF
ANLSDCRELLPHFGGHPMAAGMTLHMNDVDELRRRLNEQADTILTEEDFIPITAVDAFCKVEDVTLAAIEDMQKLAPFGV
GNPKPRIAVKDAELESIRAIGSDGSHLKMSLRDGQATLDTIGFGFGAYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQ
DIAVEAWQLFDWRSMRNVEANLAELPKEKITMLYFSKEVLNKFSLEDYKEHMMHASEVTELDEQYIVLLDLPKGTDELRD
LFKVGFPSRIYTLFYQENNHLFSTVPTRDHFKWYYSFLSQKSPFSLRQYGEQLCQHKGWSKDTVNFMTQVFFELEFVTIK
DGVIFMADKKQKRDLIESNTYREKMNHLQLEKELVYSTYQQLYTWFETIRNHKEVEQLG

Nucleotide


Download         Length: 2340 bp        

>NTDB_id=364860 BCPR1_RS05760 WP_070806869.1 1109407..1111746(+) (recJ) [Bacillus paranthracis strain PR1]
GTGTTACAACCGAAGACGCGTTGGAAAGAAAAAGAATATAATAGCGAGCGAGTGAGTGAATTAGCAAGTAAATTACAATT
ATCACCACTTGTCGTTTCGTTATTCCTCGGTAGAGGACTAGATACAGAAGATAAGATTTTAGATTTTTTAAATACAGAAA
ATCAAGAATTTCATGATCCATTTTTATTAGAAGGAATGGATAGAACGGTAGAACGTGTAAATAAGGCGATTCAAAATGGA
GAGCAAATATTAATATTTGGTGACTACGATGCGGACGGAGTAAGTAGTACAACTGTTTTATATATTGCCTTACAAGAATT
AGGTGCAGACGTAGAATTTTATATCCCAAACCGTTTTACAGAAGGTTATGGACCGAATGAAGAAGCATTTCGTTGGGCGC
ATAGCGCAGGATTTTCACTCATTATTACTGTCGATACTGGTATCGCAGCTGTACATGAAGCGAAGGTAGCGAAGGAACTT
GGGATAGATCTAATTATTACAGATCACCATGAGCCACCACCACAATTGCCAGAAGCACTTGCGATTATTCACCCGAAATT
AGATGGCGGTGTGTATCCGTTTCACTATTTAGCGGGCGTTGGTGTTGCGTTTAAAGTTGCACATGCACTACTGGGCCGTG
TACCAGAACATTTATTAGAAATTGCAGTAATTGGTACGGTAGCCGATTTAGTATCACTTCACGGTGAGAATAGATTGCTA
GTGAAGCGCGGTTTAAAACATATGCGCATGACGAAAAATATCGGACTAAAGGCGCTATTTAAAGTTGCTAACGTTTCGCA
AAGTGAAATTACAGAAGAGAGCATTGGCTTCTCAATCGCACCTCGTATTAATGCAGTTGGACGTTTAGAAGATGCTACGC
CGGCTGTACATCTTTTATTATCAGAGGATCCCGAAGAAGCGAAAGAGCTGGCTGAAGAAATTGATGAGCTGAACAAACTG
CGAAAAGATATTGTAAAGCAAATTACAGAAGAAGCTATCGCTGAAGTGGAAACGAATTTTCCGCCTGAAGACAATAAAGT
ATTAGTGCTTGCAAAAGAAGGATGGAATCCAGGTGTAATTGGAATTGTCGCTTCTAAATTAGTTGAACGTTTTTATCGTC
CAACGATTGTATTATGCATTGATCCTGTAAAAGAAACTGCAAAAGGTTCAGCGCGTAGTATTGCAGGATTTGATTTGTTT
GCAAACTTGTCAGATTGTAGAGAGTTATTGCCACACTTCGGAGGACATCCGATGGCAGCGGGAATGACGCTACATATGAA
TGATGTAGATGAATTACGCCGCCGTTTAAATGAACAGGCAGATACAATTTTAACAGAAGAAGATTTTATTCCAATTACAG
CTGTCGATGCCTTTTGCAAAGTGGAGGACGTAACACTTGCAGCGATTGAAGATATGCAAAAGTTAGCGCCATTTGGTGTT
GGAAATCCAAAGCCACGTATTGCGGTGAAAGATGCGGAGTTAGAAAGTATTCGTGCAATCGGATCAGATGGTTCTCATTT
AAAGATGTCTCTTCGTGATGGACAAGCAACATTGGATACAATTGGATTCGGTTTTGGCGCATATGCGAAAGAAATTTCTC
CAGTTGCAAAAGTATCTGTAATAGGAGAAGCGTCTATTAATGAATGGAATAATTTTAAGAAGCCGCAATTAATGGTGCAA
GATATTGCTGTAGAGGCATGGCAATTATTTGATTGGCGTAGTATGCGTAACGTAGAAGCAAATTTAGCAGAACTTCCGAA
AGAAAAAATCACGATGTTGTATTTTTCTAAAGAGGTATTGAATAAATTTTCTTTAGAAGACTATAAAGAGCATATGATGC
ATGCATCAGAAGTAACCGAGTTAGATGAGCAATACATCGTATTACTTGATTTACCAAAAGGAACAGATGAATTACGAGAT
CTATTTAAAGTTGGGTTCCCATCGCGAATCTATACGCTATTTTATCAAGAGAATAATCATTTATTTAGCACTGTTCCAAC
GAGGGATCACTTTAAATGGTACTATTCATTCTTGAGCCAAAAATCACCATTTTCTTTAAGACAATATGGAGAACAACTAT
GTCAACATAAAGGTTGGTCAAAAGATACAGTAAATTTCATGACACAGGTGTTTTTTGAGTTAGAATTTGTTACAATAAAA
GATGGCGTCATTTTTATGGCAGACAAAAAACAAAAGCGTGATTTAATTGAATCGAACACATATCGTGAGAAAATGAACCA
CTTACAATTAGAAAAAGAATTGGTTTATAGCACATATCAGCAACTATATACATGGTTTGAAACGATTCGTAATCATAAAG
AAGTAGAACAGTTAGGGTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-439)

RecJ OB domain (RecJ_OB)

(455-561)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.713

99.358

0.524

Multiple sequence alignment