Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   E3S92_RS03880 Genome accession   NZ_CP047833
Coordinates   779098..779871 (-) Length   257 a.a.
NCBI ID   WP_000055334.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_926     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 774098..784871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S92_RS03845 (E3S92_03845) - 774352..775122 (-) 771 WP_000473705.1 isoprenyl transferase -
  E3S92_RS03850 (E3S92_03850) frr 775494..776048 (-) 555 WP_001280003.1 ribosome recycling factor -
  E3S92_RS03855 (E3S92_03855) pyrH 776067..776789 (-) 723 WP_000057330.1 UMP kinase -
  E3S92_RS03860 (E3S92_03860) tsf 776926..777807 (-) 882 WP_000201387.1 translation elongation factor Ts -
  E3S92_RS03865 (E3S92_03865) - 777842..777955 (-) 114 WP_001789890.1 hypothetical protein -
  E3S92_RS03870 (E3S92_03870) rpsB 777989..778756 (-) 768 WP_160190119.1 30S ribosomal protein S2 -
  E3S92_RS03875 (E3S92_03875) - 778955..779047 (-) 93 WP_031785459.1 hypothetical protein -
  E3S92_RS03880 (E3S92_03880) codY 779098..779871 (-) 774 WP_000055334.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  E3S92_RS03885 (E3S92_03885) hslU 779896..781299 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  E3S92_RS03890 (E3S92_03890) hslV 781365..781910 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  E3S92_RS03895 (E3S92_03895) xerC 781907..782803 (-) 897 WP_001015604.1 tyrosine recombinase XerC -
  E3S92_RS03900 (E3S92_03900) trmFO 783221..784528 (-) 1308 WP_000195251.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28727.12 Da        Isoelectric Point: 6.0680

>NTDB_id=364607 E3S92_RS03880 WP_000055334.1 779098..779871(-) (codY) [Staphylococcus aureus strain UP_926]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENKELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=364607 E3S92_RS03880 WP_000055334.1 779098..779871(-) (codY) [Staphylococcus aureus strain UP_926]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAATAAAGAGTTGTTTAT
TGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTATTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGC
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428