Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | Q73A0000_RS00355 | Genome accession | NZ_CP040442 |
| Coordinates | 86588..87241 (-) | Length | 217 a.a. |
| NCBI ID | WP_193812115.1 | Uniprot ID | A0A7M2Y5H8 |
| Organism | Kaistella flava (ex Peng et al. 2021) strain 7-3A | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 81588..92241
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q73A0000_RS00335 (Q73A0000_00335) | - | 81818..83743 (-) | 1926 | WP_193812112.1 | DUF2207 domain-containing protein | - |
| Q73A0000_RS00340 (Q73A0000_00340) | - | 83748..84299 (-) | 552 | WP_244140770.1 | LemA family protein | - |
| Q73A0000_RS00345 (Q73A0000_00345) | der | 84496..85803 (+) | 1308 | WP_193812113.1 | ribosome biogenesis GTPase Der | - |
| Q73A0000_RS00350 (Q73A0000_00350) | upp | 85885..86535 (+) | 651 | WP_193812114.1 | uracil phosphoribosyltransferase | - |
| Q73A0000_RS00355 (Q73A0000_00355) | comF | 86588..87241 (-) | 654 | WP_193812115.1 | ComF family protein | Machinery gene |
| Q73A0000_RS00360 (Q73A0000_00360) | - | 87452..88921 (-) | 1470 | WP_193812116.1 | helix-turn-helix domain-containing protein | - |
| Q73A0000_RS00365 (Q73A0000_00365) | aceB | 89100..90677 (+) | 1578 | WP_193812117.1 | malate synthase A | - |
| Q73A0000_RS00370 (Q73A0000_00370) | aceA | 90907..92193 (+) | 1287 | WP_193812118.1 | isocitrate lyase | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25322.39 Da Isoelectric Point: 8.7430
>NTDB_id=364506 Q73A0000_RS00355 WP_193812115.1 86588..87241(-) (comF) [Kaistella flava (ex Peng et al. 2021) strain 7-3A]
MFLVDLLFPNRCLECNRIIHHNEVVCELCFDQINFTHHHFSESNLLTEKCRLLFPIENAFALMQFEEESTSQKIIHQLKY
GGREKIGKIISNWTLEKIDLRKSKIDLLVTIPLHPTKQKERGYNQLHLFADTLSKGLKIPCDHSLIKRNFYKKAQAQKRR
EQRTFNENLFSITKNISNQHILLIDDVFTTGNTMSAVAWQILKEGNNKVSVLVMAID
MFLVDLLFPNRCLECNRIIHHNEVVCELCFDQINFTHHHFSESNLLTEKCRLLFPIENAFALMQFEEESTSQKIIHQLKY
GGREKIGKIISNWTLEKIDLRKSKIDLLVTIPLHPTKQKERGYNQLHLFADTLSKGLKIPCDHSLIKRNFYKKAQAQKRR
EQRTFNENLFSITKNISNQHILLIDDVFTTGNTMSAVAWQILKEGNNKVSVLVMAID
Nucleotide
Download Length: 654 bp
>NTDB_id=364506 Q73A0000_RS00355 WP_193812115.1 86588..87241(-) (comF) [Kaistella flava (ex Peng et al. 2021) strain 7-3A]
ATGTTTTTAGTCGACCTACTTTTTCCGAATCGCTGTCTGGAATGTAACCGAATTATTCATCACAATGAAGTGGTTTGTGA
ATTGTGTTTTGACCAGATCAATTTTACCCATCATCATTTTTCGGAAAGCAATCTTCTAACGGAGAAATGCCGATTATTAT
TTCCGATAGAAAACGCTTTTGCTTTGATGCAGTTCGAAGAAGAAAGTACGAGTCAAAAGATTATTCATCAACTCAAATAT
GGAGGTCGAGAGAAAATTGGAAAGATCATTTCAAACTGGACTTTAGAAAAAATAGATTTAAGGAAGTCCAAAATAGATCT
TTTAGTCACCATTCCACTTCATCCGACGAAACAGAAAGAGCGTGGCTATAATCAGTTGCATCTTTTTGCGGATACTCTTT
CAAAAGGACTGAAAATCCCTTGTGACCATAGTTTAATTAAAAGAAATTTTTACAAAAAAGCTCAGGCTCAAAAACGTCGT
GAACAAAGAACATTTAATGAAAATCTATTTTCAATAACTAAAAACATTTCGAATCAACATATCTTATTAATCGATGATGT
TTTTACGACTGGAAATACAATGAGCGCCGTGGCCTGGCAAATTCTAAAAGAAGGAAATAATAAAGTCAGTGTTCTGGTAA
TGGCAATTGACTAA
ATGTTTTTAGTCGACCTACTTTTTCCGAATCGCTGTCTGGAATGTAACCGAATTATTCATCACAATGAAGTGGTTTGTGA
ATTGTGTTTTGACCAGATCAATTTTACCCATCATCATTTTTCGGAAAGCAATCTTCTAACGGAGAAATGCCGATTATTAT
TTCCGATAGAAAACGCTTTTGCTTTGATGCAGTTCGAAGAAGAAAGTACGAGTCAAAAGATTATTCATCAACTCAAATAT
GGAGGTCGAGAGAAAATTGGAAAGATCATTTCAAACTGGACTTTAGAAAAAATAGATTTAAGGAAGTCCAAAATAGATCT
TTTAGTCACCATTCCACTTCATCCGACGAAACAGAAAGAGCGTGGCTATAATCAGTTGCATCTTTTTGCGGATACTCTTT
CAAAAGGACTGAAAATCCCTTGTGACCATAGTTTAATTAAAAGAAATTTTTACAAAAAAGCTCAGGCTCAAAAACGTCGT
GAACAAAGAACATTTAATGAAAATCTATTTTCAATAACTAAAAACATTTCGAATCAACATATCTTATTAATCGATGATGT
TTTTACGACTGGAAATACAATGAGCGCCGTGGCCTGGCAAATTCTAAAAGAAGGAAATAATAAAGTCAGTGTTCTGGTAA
TGGCAATTGACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
52.535 |
100 |
0.525 |