Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   FED51_RS06980 Genome accession   NZ_CP040441
Coordinates   1444276..1446597 (+) Length   773 a.a.
NCBI ID   WP_053431573.1    Uniprot ID   -
Organism   Halalkalibacterium halodurans isolate LB-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1439276..1451597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED51_RS06955 - 1440081..1440785 (+) 705 WP_010897426.1 YczE/YyaS/YitT family protein -
  FED51_RS06960 cymR 1440718..1441137 (+) 420 WP_010897427.1 cysteine metabolism transcriptional regulator CymR -
  FED51_RS06965 - 1441162..1442322 (+) 1161 WP_053431576.1 cysteine desulfurase family protein -
  FED51_RS06970 mnmA 1442353..1443468 (+) 1116 WP_053431575.1 tRNA 2-thiouridine(34) synthase MnmA -
  FED51_RS06975 - 1443605..1444279 (+) 675 WP_053431574.1 tetratricopeptide repeat protein -
  FED51_RS06980 recD2 1444276..1446597 (+) 2322 WP_053431573.1 ATP-dependent RecD-like DNA helicase Machinery gene
  FED51_RS06985 - 1446624..1447097 (+) 474 WP_010897432.1 PRC-barrel domain-containing protein -
  FED51_RS06990 - 1447112..1447300 (+) 189 WP_010897433.1 hypothetical protein -
  FED51_RS06995 - 1447348..1447524 (+) 177 WP_134229292.1 DUF3918 domain-containing protein -
  FED51_RS07000 - 1447748..1448824 (+) 1077 WP_053431572.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 773 a.a.        Molecular weight: 86762.34 Da        Isoelectric Point: 5.0276

>NTDB_id=364477 FED51_RS06980 WP_053431573.1 1444276..1446597(+) (recD2) [Halalkalibacterium halodurans isolate LB-1]
MTDGRSLTNENEHLEKSYLKGEVVQIIFRNEENQYTVALVRVHESSDDVKEKTMTVVGLLPKLEVHDTFTFYGSFKEHPR
FGEQYVVDDLRREVPKTSQGIIRYLSSDRFPGIGKKTAQQIVDTLGEQALSRIVEDESALDAVPKLSKEKAKLLREQLLE
QQGFEQVLTTLSDYGFGVELSMKVFNVYKLHALEIIRTNPYQLIYDVEGIGFRRADRLGAAIGIKGNHPDRIQAGCHFVL
QEWCLQEGHIFLTKEALIPKIIQLLSSPAEPIEEQGVLEQMQMMEEEGALIVEEERVYIKSLYFAEKGIVSSIVSLLHQE
VQEEFPASEFLQKLGELEEELKIEYAPSQREAIETALSSPFMILTGGPGTGKTTVIKGIVELYARLHGLSLNVADYPKGT
SFPILLVAPTGRAAKRMSEATELPATTIHRLLGWKGANSGFDKNEHDPLEGELLIVDEVSMMDVWIANQLLKSVPKGMQV
IFVGDQDQLPSVGPGQVMRDLLTSGVVPTVELTDIYRQAEGSSIIDLAHAIKSGSLPNNIVEPMKDRRFFPCRPEQVKEV
IGQICRGAKSKGYTAKDIQVLAPMYKGNAGINELNAMLQELFNPASEQRRELRFGDIIYRTGDVVLQLVNNPDENVYNGD
RGEIVAILFAKETVEKQDQVVISFDGVEVIYYRKDLSQITHAYCTSIHKAQGSEFPTVVMPIIRNYSRMLKRNLLYTGIT
RAKQYLLMCGEVSAMERAIQELDEDGRNSMLKEKLQAVLGKDNGHDLKDDCLH

Nucleotide


Download         Length: 2322 bp        

>NTDB_id=364477 FED51_RS06980 WP_053431573.1 1444276..1446597(+) (recD2) [Halalkalibacterium halodurans isolate LB-1]
ATGACGGATGGGCGCTCATTGACCAATGAAAATGAGCACCTCGAGAAAAGCTATCTCAAAGGGGAAGTCGTTCAGATCAT
CTTTCGGAACGAAGAGAACCAGTACACGGTTGCGCTAGTTCGTGTCCACGAGTCGTCTGATGATGTGAAAGAGAAAACGA
TGACCGTGGTTGGTTTGCTACCGAAGCTAGAAGTTCATGATACGTTTACCTTTTATGGTTCTTTCAAAGAGCACCCTCGT
TTCGGTGAACAGTACGTTGTGGACGACTTGCGCCGCGAAGTACCGAAAACGTCACAAGGGATCATTCGTTATTTGTCGAG
CGACAGATTTCCAGGCATCGGAAAAAAGACAGCTCAGCAAATTGTAGATACACTTGGAGAACAAGCGTTGTCACGAATTG
TAGAGGATGAATCGGCCCTTGATGCCGTACCAAAGCTTTCAAAAGAGAAAGCGAAACTGCTTCGAGAACAGCTTTTAGAG
CAGCAAGGTTTTGAACAAGTTTTGACCACTTTATCCGATTACGGGTTTGGGGTGGAGTTGTCGATGAAAGTATTTAATGT
CTACAAGCTTCACGCCCTTGAAATCATTCGCACGAATCCATACCAACTCATCTATGATGTGGAGGGAATAGGATTCCGTC
GTGCAGATCGTCTTGGAGCAGCCATTGGCATTAAAGGCAACCATCCCGACCGAATTCAAGCCGGCTGTCACTTCGTTTTA
CAAGAGTGGTGCTTACAAGAAGGGCACATTTTTTTGACGAAGGAAGCGCTCATTCCTAAGATTATTCAGCTTTTATCATC
ACCAGCTGAGCCGATTGAGGAGCAGGGTGTATTAGAGCAAATGCAAATGATGGAAGAAGAAGGAGCTCTCATAGTTGAAG
AGGAGCGCGTGTATATAAAATCGTTATACTTTGCAGAAAAAGGAATTGTATCAAGCATCGTTTCGCTACTTCATCAGGAA
GTACAAGAGGAGTTCCCTGCTTCAGAATTTTTGCAAAAGCTAGGAGAGTTGGAGGAAGAGCTGAAAATTGAATATGCCCC
GTCTCAACGGGAGGCGATTGAAACAGCCCTTTCTTCACCGTTTATGATTTTAACCGGAGGGCCTGGGACGGGGAAAACGA
CGGTCATAAAAGGGATTGTGGAGCTGTATGCCCGCCTTCACGGACTTTCGCTTAATGTCGCTGATTATCCGAAAGGGACT
TCCTTCCCAATATTACTCGTGGCCCCGACTGGCCGGGCAGCCAAACGGATGAGTGAAGCGACAGAACTGCCAGCCACGAC
AATCCACCGTTTATTAGGATGGAAAGGTGCCAATAGTGGCTTTGACAAAAATGAACACGATCCCCTAGAAGGTGAGCTCC
TAATTGTGGATGAAGTGTCGATGATGGACGTGTGGATTGCTAACCAGCTGCTAAAATCCGTACCGAAAGGGATGCAAGTC
ATTTTTGTTGGCGACCAAGATCAGCTTCCATCTGTTGGTCCAGGCCAGGTGATGAGAGATTTGCTTACCTCGGGTGTCGT
TCCTACGGTGGAGTTAACGGATATCTATAGGCAAGCGGAAGGGTCCTCAATCATTGATCTAGCGCATGCCATAAAATCAG
GTTCATTACCAAATAACATTGTAGAGCCAATGAAGGACAGGCGCTTTTTTCCGTGCAGACCGGAACAAGTAAAGGAAGTG
ATTGGGCAAATTTGTCGTGGGGCAAAAAGCAAAGGCTATACTGCTAAAGACATCCAAGTGCTCGCGCCAATGTATAAAGG
AAATGCTGGAATTAATGAATTGAATGCCATGCTTCAAGAATTGTTCAATCCAGCGAGTGAGCAGCGGAGAGAGTTACGGT
TCGGGGATATCATATACCGCACAGGGGATGTTGTCTTACAGCTTGTAAACAATCCTGATGAGAATGTCTATAATGGGGAC
CGAGGGGAAATTGTGGCCATCTTATTTGCCAAGGAAACGGTGGAAAAACAAGACCAAGTCGTCATTTCTTTCGATGGCGT
GGAAGTGATTTATTATCGTAAAGATTTATCACAGATTACTCATGCGTATTGTACATCCATTCATAAAGCACAAGGAAGTG
AATTTCCTACGGTCGTCATGCCGATCATCCGCAACTATTCACGGATGCTAAAGCGGAACCTTTTGTACACAGGAATAACG
AGAGCGAAGCAATATTTATTAATGTGCGGGGAAGTTTCAGCGATGGAACGAGCGATTCAAGAATTAGATGAAGACGGCCG
GAATTCTATGCTGAAGGAGAAGCTTCAGGCAGTACTGGGAAAAGACAACGGACATGACCTAAAGGACGATTGCTTACACT
AA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

Helix-hairpin-helix containing domain (HHH_RecD2)

(160-251)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-664)

AAA domain (AAA_30)

(345-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

54.362

96.378

0.524

Multiple sequence alignment