Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   FED51_RS06855 Genome accession   NZ_CP040441
Coordinates   1416011..1418365 (+) Length   784 a.a.
NCBI ID   WP_053431589.1    Uniprot ID   A0A0M0KM61
Organism   Halalkalibacterium halodurans isolate LB-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1411011..1423365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED51_RS06825 - 1411198..1411683 (+) 486 WP_138090354.1 COG2426 family protein -
  FED51_RS06830 - 1411716..1411991 (+) 276 WP_010897403.1 post-transcriptional regulator -
  FED51_RS06835 secD 1412161..1413474 (+) 1314 WP_083445571.1 protein translocase subunit SecD -
  FED51_RS06840 secF 1413464..1414399 (+) 936 WP_083445570.1 protein translocase subunit SecF -
  FED51_RS06845 - 1414720..1415622 (+) 903 WP_053431591.1 cation diffusion facilitator family transporter -
  FED51_RS06850 - 1415632..1415949 (+) 318 WP_053431590.1 LapA family protein -
  FED51_RS06855 recJ 1416011..1418365 (+) 2355 WP_053431589.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  FED51_RS06860 - 1418365..1418880 (+) 516 WP_053431588.1 adenine phosphoribosyltransferase -
  FED51_RS06865 - 1419200..1421386 (+) 2187 WP_053431587.1 RelA/SpoT family protein -
  FED51_RS06870 dtd 1421415..1421855 (+) 441 WP_053431586.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 87961.35 Da        Isoelectric Point: 5.0207

>NTDB_id=364476 FED51_RS06855 WP_053431589.1 1416011..1418365(+) (recJ) [Halalkalibacterium halodurans isolate LB-1]
MLESKARWNVAEQLDERIRPLLEHLHIEPIVAKLLVIRGIDTVEEAKTFLQVDESLLHDPYELDGMEQVVARVRQAIKAE
EKILIYGDYDADGVSSTSVMVYTLRELGAQFDYYIPNRFTEGYGPNENALRWAKEEGYQLVITVDTGIAAVHEAEVAKEI
GLDFIVTDHHEPPPVLPDAVAIINPKKPGCSYPCKHLAGVGVAFKLAHALLERVPYDLLDLVAIGTIADLVPLTDENRWL
AKEGLKAIETTTKPGIQALKKVCGFHEDNVQAEHVGFGIGPRINAAGRLDSAKPAVELLITDQVETGQQLAEQIDLLNKE
RQAIVSEIAAEAINLVKELYPPEDNHVLVVGGHGWNPGVIGIVASRLVETFYRPTIVLSYDEEKGIAKGSARSIEGFDMF
HELSKNRELLPHFGGHPMAAGLTMSLQDVDELRKRMNAQAREALRPEDFIPITRIDVQASVDEISVSTIEKMNALAPYGV
GNPEPKVMLTDVKIEGMRKIGAASNHLKVTFQQNGTTLDGVGFHLGHLSDEISPTARVSAVGVLSINEWNGHVKPQLMIE
DLAVNEWQLFDWRSARVDILSERIVGLPEEKRLLIAFREQTVQALGLASFNVFDGNDLANIPSMENRYVVLLDPPVESNQ
LSALFVEGGCPSRIYSIFYQEEDSYFSTNPTREHFRWFYGFLMKQKQFNLHTHGRRLAHTRGWTEETISFMAKVFFELGF
VTIKDGVITLVEAPEKKGLDQSRTFRMKQEQATIEQQFVYSSYEELKQWFTRAIQERKIKETIQ

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=364476 FED51_RS06855 WP_053431589.1 1416011..1418365(+) (recJ) [Halalkalibacterium halodurans isolate LB-1]
ATGCTAGAATCGAAAGCAAGATGGAACGTAGCAGAGCAGCTGGACGAACGAATCCGTCCGCTGCTTGAACATTTACATAT
AGAACCGATCGTTGCCAAACTTTTAGTGATTCGCGGGATCGACACGGTAGAAGAAGCGAAGACTTTTTTACAAGTGGACG
AGTCCCTCCTTCATGATCCGTATGAGCTTGATGGAATGGAACAAGTGGTTGCTCGGGTCAGGCAAGCGATCAAGGCCGAG
GAAAAGATTTTGATTTACGGTGATTATGATGCGGATGGCGTTAGCTCCACGTCCGTGATGGTCTATACATTGCGTGAGCT
TGGAGCCCAGTTTGATTACTACATACCCAATCGGTTTACTGAAGGGTACGGTCCGAACGAAAACGCTCTCAGGTGGGCGA
AGGAAGAAGGCTATCAACTAGTGATCACCGTTGATACCGGAATTGCAGCTGTTCATGAAGCAGAGGTTGCGAAAGAGATC
GGACTAGATTTTATTGTGACGGATCATCATGAACCACCACCAGTGCTTCCAGATGCAGTGGCCATAATTAACCCGAAAAA
GCCTGGCTGCTCTTACCCGTGCAAACACTTAGCTGGTGTTGGGGTCGCATTTAAACTAGCCCATGCCCTATTGGAACGGG
TCCCCTATGATTTGCTCGATCTTGTGGCCATTGGCACGATTGCCGACTTAGTTCCTCTAACAGATGAAAATCGCTGGTTA
GCAAAAGAAGGATTAAAGGCGATCGAAACAACGACGAAGCCAGGAATTCAGGCGTTGAAAAAAGTTTGCGGTTTTCATGA
AGATAACGTTCAGGCGGAGCATGTCGGTTTTGGCATCGGTCCACGAATAAACGCCGCCGGACGCCTCGATTCGGCCAAAC
CGGCTGTTGAATTGTTGATCACCGATCAAGTAGAGACAGGGCAACAGCTTGCCGAACAAATCGATTTACTGAATAAAGAG
CGCCAAGCAATTGTTTCAGAGATTGCTGCTGAAGCAATTAATCTAGTAAAAGAATTATATCCACCAGAAGACAATCACGT
TCTCGTCGTCGGTGGACATGGTTGGAATCCTGGTGTCATTGGAATTGTCGCTTCCAGATTAGTGGAGACGTTTTACCGCC
CGACGATCGTATTAAGTTATGATGAAGAAAAAGGAATAGCCAAAGGGTCCGCGCGGAGCATTGAAGGGTTTGATATGTTC
CATGAGCTATCTAAAAATCGCGAGCTGTTGCCTCACTTTGGGGGACATCCAATGGCTGCGGGTTTGACGATGAGCCTTCA
AGATGTAGACGAACTGAGAAAACGGATGAATGCTCAAGCACGGGAGGCGTTACGACCGGAAGATTTTATACCGATCACAC
GCATTGATGTGCAAGCGTCGGTCGATGAGATCTCCGTTTCTACCATCGAAAAAATGAATGCTCTCGCACCTTATGGCGTT
GGCAATCCAGAACCGAAAGTCATGTTAACTGATGTGAAGATCGAAGGGATGCGGAAAATTGGCGCAGCATCAAATCATTT
AAAAGTGACGTTTCAACAAAACGGTACAACCCTTGACGGGGTCGGCTTTCATTTAGGCCATTTATCCGATGAGATTTCGC
CAACAGCTAGAGTTTCGGCCGTCGGAGTTTTGTCTATTAATGAATGGAACGGTCACGTCAAGCCACAATTAATGATTGAA
GATTTGGCGGTGAACGAATGGCAGCTCTTCGACTGGCGCAGTGCACGGGTCGACATATTGTCTGAGCGGATCGTAGGCTT
GCCAGAAGAGAAACGACTGCTTATAGCCTTCCGTGAGCAAACAGTACAGGCGTTAGGTTTAGCCTCGTTTAACGTGTTCG
ATGGAAATGACCTAGCAAATATCCCTAGCATGGAAAATCGCTACGTTGTTTTACTCGATCCCCCGGTGGAATCAAATCAG
CTTTCCGCCCTTTTTGTTGAAGGAGGATGTCCAAGTCGGATTTATTCGATCTTCTATCAAGAGGAAGATTCGTATTTTTC
AACGAATCCGACGCGAGAGCATTTTCGCTGGTTTTATGGTTTTTTAATGAAGCAAAAACAGTTTAATCTTCATACCCATG
GAAGAAGGCTTGCCCATACCCGTGGTTGGACGGAAGAAACGATCTCATTCATGGCCAAGGTGTTTTTCGAACTAGGTTTT
GTTACAATAAAAGATGGGGTGATCACGCTTGTGGAGGCACCCGAAAAAAAAGGCTTGGATCAATCGCGAACATTTCGAAT
GAAACAAGAACAAGCAACGATTGAACAGCAATTTGTTTATTCGTCCTATGAAGAGTTAAAGCAATGGTTCACTCGAGCGA
TTCAAGAACGTAAGATCAAGGAGACGATTCAGTGA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(316-438)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M0KM61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

51.154

99.49

0.509

Multiple sequence alignment