Detailed information
Bioinformatically predicted
Overview
| Name | xcpW | Type | Machinery gene |
| Locus tag | FE003_RS10695 | Genome accession | NZ_CP040425 |
| Coordinates | 2203102..2203803 (-) | Length | 233 a.a. |
| NCBI ID | WP_000594589.1 | Uniprot ID | A0A9P3CZ31 |
| Organism | Acinetobacter baumannii strain PB364 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2154325..2213822 | 2203102..2203803 | within | 0 |
Gene organization within MGE regions
Location: 2154325..2213822
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FE003_RS10375 (FE003_10375) | - | 2154325..2154834 (-) | 510 | WP_000095892.1 | lysozyme | - |
| FE003_RS10380 (FE003_10380) | - | 2154818..2155084 (-) | 267 | WP_000774828.1 | holin | - |
| FE003_RS10385 (FE003_10385) | - | 2155159..2155383 (-) | 225 | WP_001104854.1 | hypothetical protein | - |
| FE003_RS10390 (FE003_10390) | - | 2155385..2157421 (-) | 2037 | WP_002018761.1 | hypothetical protein | - |
| FE003_RS10395 (FE003_10395) | - | 2157475..2160309 (-) | 2835 | WP_000078482.1 | host specificity factor TipJ family phage tail protein | - |
| FE003_RS10400 (FE003_10400) | - | 2160260..2160655 (-) | 396 | WP_001026372.1 | hypothetical protein | - |
| FE003_RS10405 (FE003_10405) | - | 2160652..2161161 (-) | 510 | WP_000587324.1 | DUF1833 family protein | - |
| FE003_RS10410 (FE003_10410) | - | 2161164..2161625 (-) | 462 | WP_000882463.1 | hypothetical protein | - |
| FE003_RS10415 (FE003_10415) | - | 2161641..2165234 (-) | 3594 | WP_000246490.1 | transglycosylase SLT domain-containing protein | - |
| FE003_RS10420 (FE003_10420) | - | 2165297..2165629 (-) | 333 | WP_001031955.1 | hypothetical protein | - |
| FE003_RS10425 (FE003_10425) | - | 2165706..2165921 (-) | 216 | WP_000498808.1 | hypothetical protein | - |
| FE003_RS10430 (FE003_10430) | - | 2165957..2166472 (-) | 516 | WP_001074127.1 | phage tail assembly chaperone family protein, TAC | - |
| FE003_RS10435 (FE003_10435) | - | 2166474..2166950 (-) | 477 | WP_001062223.1 | phage tail tube protein | - |
| FE003_RS10440 (FE003_10440) | - | 2167022..2167396 (-) | 375 | WP_000598741.1 | DUF3168 domain-containing protein | - |
| FE003_RS10445 (FE003_10445) | - | 2167396..2167881 (-) | 486 | WP_000235306.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| FE003_RS10450 (FE003_10450) | - | 2167885..2168241 (-) | 357 | WP_001139340.1 | phage head closure protein | - |
| FE003_RS10455 (FE003_10455) | - | 2168243..2168530 (-) | 288 | WP_000631202.1 | head-tail connector protein | - |
| FE003_RS20335 | - | 2168527..2168703 (-) | 177 | WP_000666092.1 | hypothetical protein | - |
| FE003_RS10460 (FE003_10460) | - | 2168751..2169923 (-) | 1173 | WP_000137059.1 | phage major capsid protein | - |
| FE003_RS10465 (FE003_10465) | - | 2169916..2170578 (-) | 663 | WP_000375469.1 | HK97 family phage prohead protease | - |
| FE003_RS10470 (FE003_10470) | - | 2170571..2171797 (-) | 1227 | WP_000108393.1 | phage portal protein | - |
| FE003_RS10475 (FE003_10475) | - | 2171794..2173485 (-) | 1692 | WP_000097334.1 | terminase large subunit | - |
| FE003_RS10480 (FE003_10480) | - | 2173489..2173971 (-) | 483 | WP_001219088.1 | terminase small subunit | - |
| FE003_RS20675 | - | 2173993..2174118 (-) | 126 | WP_000983284.1 | hypothetical protein | - |
| FE003_RS10485 (FE003_10485) | - | 2174118..2174342 (-) | 225 | WP_000202128.1 | hypothetical protein | - |
| FE003_RS10490 (FE003_10490) | - | 2174387..2174686 (-) | 300 | WP_000776297.1 | HNH endonuclease | - |
| FE003_RS10495 (FE003_10495) | - | 2174616..2174909 (-) | 294 | WP_001079329.1 | hypothetical protein | - |
| FE003_RS10500 (FE003_10500) | - | 2174915..2175097 (-) | 183 | WP_000063945.1 | hypothetical protein | - |
| FE003_RS10505 (FE003_10505) | - | 2175087..2175617 (-) | 531 | WP_000433065.1 | hypothetical protein | - |
| FE003_RS10510 (FE003_10510) | - | 2175655..2176041 (-) | 387 | WP_000693736.1 | hypothetical protein | - |
| FE003_RS20340 | - | 2176144..2176419 (-) | 276 | WP_002019135.1 | hypothetical protein | - |
| FE003_RS20345 | - | 2176412..2176585 (-) | 174 | WP_000774599.1 | hypothetical protein | - |
| FE003_RS10515 (FE003_10515) | - | 2176876..2177772 (-) | 897 | WP_000572117.1 | hypothetical protein | - |
| FE003_RS10520 (FE003_10520) | - | 2177838..2178332 (-) | 495 | WP_001086184.1 | hypothetical protein | - |
| FE003_RS10525 (FE003_10525) | - | 2178329..2178610 (-) | 282 | WP_000064051.1 | hypothetical protein | - |
| FE003_RS10530 (FE003_10530) | - | 2178603..2179208 (-) | 606 | WP_000801886.1 | hypothetical protein | - |
| FE003_RS10535 (FE003_10535) | - | 2179205..2179483 (-) | 279 | WP_000846972.1 | hypothetical protein | - |
| FE003_RS10540 (FE003_10540) | - | 2179480..2180811 (-) | 1332 | WP_000507046.1 | replicative DNA helicase | - |
| FE003_RS10545 (FE003_10545) | - | 2180811..2181695 (-) | 885 | WP_002006015.1 | YdaU family protein | - |
| FE003_RS10550 (FE003_10550) | - | 2181695..2181991 (-) | 297 | WP_001005281.1 | hypothetical protein | - |
| FE003_RS10555 (FE003_10555) | - | 2182050..2182235 (-) | 186 | WP_002028116.1 | hypothetical protein | - |
| FE003_RS10560 (FE003_10560) | - | 2182364..2183056 (+) | 693 | WP_002028118.1 | S24 family peptidase | - |
| FE003_RS10565 (FE003_10565) | - | 2183306..2184037 (+) | 732 | WP_138067724.1 | hypothetical protein | - |
| FE003_RS10570 (FE003_10570) | - | 2184040..2184456 (+) | 417 | WP_001260746.1 | hypothetical protein | - |
| FE003_RS10580 (FE003_10580) | - | 2184679..2185095 (+) | 417 | WP_000073111.1 | hypothetical protein | - |
| FE003_RS10585 (FE003_10585) | - | 2185105..2185665 (+) | 561 | WP_000739593.1 | hypothetical protein | - |
| FE003_RS10590 (FE003_10590) | - | 2185674..2186042 (+) | 369 | WP_000160441.1 | hypothetical protein | - |
| FE003_RS10595 (FE003_10595) | - | 2186042..2186812 (+) | 771 | WP_001067109.1 | phage repressor protein/antirepressor Ant | - |
| FE003_RS10600 (FE003_10600) | - | 2186809..2187060 (+) | 252 | WP_000141159.1 | hypothetical protein | - |
| FE003_RS10605 (FE003_10605) | - | 2187026..2187985 (-) | 960 | WP_000190203.1 | tyrosine-type recombinase/integrase | - |
| FE003_RS10610 (FE003_10610) | zapE | 2188162..2189304 (-) | 1143 | WP_000933387.1 | cell division protein ZapE | - |
| FE003_RS10615 (FE003_10615) | - | 2189388..2190407 (-) | 1020 | WP_000830356.1 | helix-turn-helix domain-containing protein | - |
| FE003_RS10620 (FE003_10620) | - | 2190529..2192076 (+) | 1548 | WP_014538345.1 | flavin-containing monooxygenase | - |
| FE003_RS10625 (FE003_10625) | - | 2192126..2192557 (+) | 432 | Protein_2058 | hypothetical protein | - |
| FE003_RS10630 (FE003_10630) | - | 2192626..2193716 (+) | 1091 | WP_085940413.1 | IS4-like element ISAba1 family transposase | - |
| FE003_RS10635 (FE003_10635) | - | 2193735..2194226 (+) | 492 | Protein_2060 | lysine exporter LysO family protein | - |
| FE003_RS10640 (FE003_10640) | pyrF | 2194223..2194921 (-) | 699 | WP_000392928.1 | orotidine-5'-phosphate decarboxylase | - |
| FE003_RS10645 (FE003_10645) | - | 2195087..2195452 (-) | 366 | WP_001269278.1 | lipopolysaccharide assembly protein LapA domain-containing protein | - |
| FE003_RS10650 (FE003_10650) | - | 2195477..2195779 (-) | 303 | WP_000205997.1 | integration host factor subunit beta | - |
| FE003_RS10655 (FE003_10655) | rpsA | 2195936..2197609 (-) | 1674 | WP_000140309.1 | 30S ribosomal protein S1 | - |
| FE003_RS10660 (FE003_10660) | cmk | 2197714..2198400 (-) | 687 | WP_000218018.1 | (d)CMP kinase | - |
| FE003_RS10665 (FE003_10665) | - | 2198408..2198851 (-) | 444 | WP_001246675.1 | SRPBCC family protein | - |
| FE003_RS10670 (FE003_10670) | tadA | 2198921..2199424 (-) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
| FE003_RS10675 (FE003_10675) | - | 2199431..2200555 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| FE003_RS10680 (FE003_10680) | ung | 2200552..2201265 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| FE003_RS10685 (FE003_10685) | - | 2201316..2201912 (-) | 597 | WP_000908452.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| FE003_RS10690 (FE003_10690) | gspK | 2202143..2203102 (-) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| FE003_RS10695 (FE003_10695) | xcpW | 2203102..2203803 (-) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| FE003_RS10700 (FE003_10700) | xcpV | 2203803..2204183 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| FE003_RS10705 (FE003_10705) | - | 2204173..2204727 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| FE003_RS10710 (FE003_10710) | - | 2204737..2205345 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| FE003_RS10715 (FE003_10715) | - | 2205383..2206156 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| FE003_RS10720 (FE003_10720) | - | 2206174..2206515 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| FE003_RS10725 (FE003_10725) | - | 2206527..2207507 (-) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| FE003_RS10730 (FE003_10730) | kdsB | 2207519..2208280 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| FE003_RS10735 (FE003_10735) | lpxK | 2208290..2209300 (-) | 1011 | WP_000050464.1 | tetraacyldisaccharide 4'-kinase | - |
| FE003_RS10740 (FE003_10740) | msbA | 2209303..2211030 (-) | 1728 | WP_001070734.1 | lipid A export permease/ATP-binding protein MsbA | - |
| FE003_RS10745 (FE003_10745) | - | 2211027..2211455 (-) | 429 | WP_000669684.1 | ExbD/TolR family protein | - |
| FE003_RS10750 (FE003_10750) | - | 2211471..2212106 (-) | 636 | WP_000264037.1 | MotA/TolQ/ExbB proton channel family protein | - |
| FE003_RS10755 (FE003_10755) | - | 2212156..2213043 (-) | 888 | WP_000023433.1 | ParB/RepB/Spo0J family partition protein | - |
| FE003_RS10760 (FE003_10760) | - | 2213040..2213822 (-) | 783 | WP_000057212.1 | ParA family protein | - |
Sequence
Protein
Download Length: 233 a.a. Molecular weight: 26639.58 Da Isoelectric Point: 9.3468
>NTDB_id=364288 FE003_RS10695 WP_000594589.1 2203102..2203803(-) (xcpW) [Acinetobacter baumannii strain PB364]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS
Nucleotide
Download Length: 702 bp
>NTDB_id=364288 FE003_RS10695 WP_000594589.1 2203102..2203803(-) (xcpW) [Acinetobacter baumannii strain PB364]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpW | Acinetobacter baumannii D1279779 |
99.571 |
100 |
0.996 |