Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   FED53_RS04130 Genome accession   NZ_CP040367
Coordinates   687327..689690 (+) Length   787 a.a.
NCBI ID   WP_061784994.1    Uniprot ID   -
Organism   Priestia flexa isolate 1-2-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 682327..694690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED53_RS04105 (FED53_04105) - 682334..683599 (-) 1266 WP_061784991.1 replication-associated recombination protein A -
  FED53_RS04110 (FED53_04110) cymR 683801..684217 (+) 417 WP_025911725.1 cysteine metabolism transcriptional regulator CymR -
  FED53_RS04115 (FED53_04115) - 684244..685386 (+) 1143 WP_061784992.1 cysteine desulfurase family protein -
  FED53_RS04120 (FED53_04120) mnmA 685415..686527 (+) 1113 WP_061784993.1 tRNA 2-thiouridine(34) synthase MnmA -
  FED53_RS04125 (FED53_04125) - 686639..687298 (+) 660 WP_025911721.1 tetratricopeptide repeat protein -
  FED53_RS04130 (FED53_04130) recD2 687327..689690 (+) 2364 WP_061784994.1 ATP-dependent RecD-like DNA helicase Machinery gene
  FED53_RS04135 (FED53_04135) - 689820..690011 (+) 192 WP_025911719.1 hypothetical protein -
  FED53_RS04140 (FED53_04140) - 690033..690167 (+) 135 WP_076512682.1 YrzQ family protein -
  FED53_RS04145 (FED53_04145) - 690295..691359 (+) 1065 WP_390894719.1 AI-2E family transporter -
  FED53_RS04150 (FED53_04150) alaS 691758..694391 (+) 2634 WP_138116609.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88915.75 Da        Isoelectric Point: 4.9945

>NTDB_id=363684 FED53_RS04130 WP_061784994.1 687327..689690(+) (recD2) [Priestia flexa isolate 1-2-1]
MSEEVLNPLQPDEEKTYIKGTAIVTVFHNEENLYNVTRIRIKETNVSMDDKEAIVTGYFPRLNEDELYTFIGNFKEHPKF
GLQFQVEQFKKELPQSKQGVIQYLSSDLFNGIGKKTAENIVEALGERAIYRMLQDPAVLKKVSRLSADKAEKLIVQLREH
QGLEEVMVKLTDLGFGPQLSMKIFQAYKQEALEVIQTNPYQLVEDVQGIGFNRADELGRKLGLATNHPNRLRAGILYVIE
HECNQMGHVYVKAEQLYQKTGELLQKSRQEPLSEMDIIREIDALKEEKKIIIDDDKMYFPPLFYAEKGVVKAIGKLMAQT
EYEEQFPESEFLLALGELEERLGVQYAPSQREGIQKALLSPMLLLTGGPGTGKTTVIKGIVELYAELHGCSLNPGDYKKD
EGFPVLLVAPTGRAAKRMSEATGLPAVTIHRLLKWNGQEGFDHNEENPINGKLLIVDEVSMVDLWLAHQLFKSLPASIQV
VLVGDEDQLPSVGPGQVLKDLLHSEAVPTVRLTDVYRQEEGSSIIDLAHEIKKGRLPSDLTNQQGDRSFIRCYGAQITDV
VKQVCGNAVKKGYTAKDIQVLAPMYKGPAGIDKMNEVLQELFNPASQQRRELKHGDVTYRVGDKVLQLVNQPDSNVFNGD
MGEIVSVFFAKENTEKQDMLVISFEGNEVTYTKQDFNQITHAYCCSIHKSQGSEFPIVVLPIVKSYYRMLRRNLLYTAVT
RSKQFLILCGEEEAFQIGVNRNEDSIRQTNLQALLKEQLVDELEDPEVPFMKDANIGMENLTPYDFM

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=363684 FED53_RS04130 WP_061784994.1 687327..689690(+) (recD2) [Priestia flexa isolate 1-2-1]
ATGAGTGAGGAAGTTCTAAACCCTTTACAACCAGATGAAGAAAAAACGTACATAAAAGGCACGGCAATTGTCACGGTCTT
TCATAATGAAGAAAATTTGTATAACGTAACAAGAATTAGAATAAAAGAAACAAATGTATCCATGGACGATAAAGAAGCGA
TTGTTACGGGATATTTCCCCCGTTTGAACGAAGATGAACTTTACACTTTTATTGGAAACTTTAAAGAGCATCCGAAATTT
GGCCTTCAGTTTCAAGTAGAGCAATTTAAAAAAGAGCTTCCCCAGTCAAAACAAGGGGTCATTCAGTACTTATCAAGTGA
TCTCTTTAACGGTATTGGTAAAAAAACCGCAGAAAATATTGTAGAAGCACTTGGTGAACGTGCAATTTATCGAATGCTAC
AAGACCCTGCGGTATTGAAAAAGGTGTCTAGGCTATCTGCTGATAAAGCAGAAAAGCTAATCGTTCAGCTGCGAGAGCAC
CAGGGGTTAGAAGAAGTAATGGTTAAGCTGACAGATTTGGGATTTGGTCCGCAGCTTTCCATGAAAATTTTCCAAGCTTA
TAAACAAGAGGCGCTAGAAGTGATTCAAACAAACCCCTATCAGCTTGTTGAAGATGTTCAAGGAATCGGCTTTAACCGAG
CGGATGAATTAGGAAGGAAGCTAGGGTTAGCAACCAACCATCCTAACCGGCTTCGAGCTGGAATTTTATACGTTATCGAG
CATGAATGCAATCAAATGGGACACGTCTACGTGAAAGCAGAGCAATTGTATCAGAAAACGGGAGAGCTGTTACAAAAAAG
TCGTCAAGAACCGTTATCAGAAATGGATATTATACGAGAGATTGATGCACTAAAAGAAGAGAAAAAAATTATTATTGATG
ACGATAAAATGTACTTCCCACCGCTTTTTTATGCTGAAAAAGGAGTCGTTAAAGCGATTGGTAAGCTAATGGCTCAAACA
GAGTATGAAGAGCAATTTCCTGAATCAGAATTTCTTCTAGCTCTAGGGGAGTTAGAAGAGCGTCTAGGCGTGCAGTATGC
ACCTTCGCAAAGAGAAGGAATTCAAAAAGCGCTTTTATCCCCAATGCTTTTGCTTACAGGAGGACCAGGTACCGGTAAAA
CAACAGTTATAAAGGGAATTGTTGAACTTTATGCAGAGCTTCATGGCTGTTCGCTAAATCCAGGGGATTATAAAAAAGAC
GAAGGATTTCCAGTGCTGCTTGTCGCTCCTACAGGTCGAGCTGCTAAACGGATGAGCGAGGCTACTGGACTGCCAGCGGT
GACAATCCACAGACTTTTAAAGTGGAATGGACAAGAAGGGTTTGACCACAATGAAGAAAATCCAATCAATGGTAAGTTAC
TGATTGTGGACGAGGTCTCTATGGTAGATTTATGGCTTGCTCACCAGCTCTTTAAATCACTTCCGGCTAGCATCCAAGTA
GTGCTTGTAGGTGATGAAGATCAATTACCTTCAGTTGGTCCTGGTCAGGTGTTGAAAGATTTATTACATTCTGAAGCTGT
TCCTACCGTACGATTAACAGATGTATATCGCCAAGAAGAAGGCTCATCTATCATTGATTTGGCTCATGAAATTAAAAAAG
GACGTCTTCCATCCGATTTGACTAATCAGCAAGGCGATCGTTCCTTTATTCGTTGTTACGGAGCGCAAATTACAGATGTT
GTCAAACAAGTGTGCGGCAATGCTGTAAAAAAAGGCTATACGGCTAAAGATATTCAAGTGCTGGCTCCAATGTATAAAGG
TCCAGCGGGGATTGATAAAATGAATGAAGTACTGCAAGAATTATTTAATCCAGCCTCTCAACAGCGGAGAGAGTTAAAGC
ACGGAGATGTAACATATCGTGTAGGCGATAAGGTACTTCAGCTTGTAAATCAACCTGATAGTAATGTTTTTAATGGAGAT
ATGGGTGAGATTGTGTCTGTTTTTTTCGCAAAGGAAAACACGGAAAAGCAGGATATGCTTGTTATTTCATTCGAAGGAAA
TGAAGTAACCTATACGAAACAAGACTTTAATCAGATTACGCATGCGTACTGCTGCTCTATTCATAAATCACAAGGAAGCG
AGTTTCCGATTGTGGTGTTGCCTATTGTGAAAAGTTATTATCGCATGCTCCGACGGAACCTGCTTTATACTGCCGTTACG
CGGAGCAAGCAGTTCTTGATCTTATGTGGTGAAGAAGAAGCGTTTCAAATTGGCGTAAATCGTAACGAAGACAGCATTCG
ACAGACCAATCTACAAGCCCTTCTCAAAGAGCAATTAGTTGATGAGTTAGAAGATCCTGAGGTGCCATTTATGAAAGATG
CAAATATTGGCATGGAAAACCTTACGCCGTATGATTTTATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-664)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-250)

AAA domain (AAA_30)

(346-552)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

64.879

99.492

0.645

Multiple sequence alignment