Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EQK03_RS13990 Genome accession   NZ_CP040342
Coordinates   2721815..2722594 (+) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus cereus strain DLOU-Weihai     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2682973..2738038 2721815..2722594 within 0


Gene organization within MGE regions


Location: 2682973..2738038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQK03_RS13800 rsmB 2683195..2684529 (+) 1335 WP_001249666.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  EQK03_RS13805 rlmN 2684534..2685622 (+) 1089 WP_006928333.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  EQK03_RS13810 - 2685627..2686379 (+) 753 WP_000648703.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  EQK03_RS13815 pknB 2686388..2688361 (+) 1974 WP_000904747.1 Stk1 family PASTA domain-containing Ser/Thr kinase -
  EQK03_RS13820 rsgA 2688608..2689489 (+) 882 WP_001113932.1 ribosome small subunit-dependent GTPase A -
  EQK03_RS13825 rpe 2689492..2690136 (+) 645 WP_000589974.1 ribulose-phosphate 3-epimerase -
  EQK03_RS13830 - 2690206..2690886 (+) 681 WP_000752663.1 thiamine diphosphokinase -
  EQK03_RS13835 spoVM 2690953..2691033 (+) 81 WP_001213599.1 stage V sporulation protein SpoVM -
  EQK03_RS13840 rpmB 2691107..2691295 (-) 189 WP_000124776.1 50S ribosomal protein L28 -
  EQK03_RS13845 - 2691672..2692034 (+) 363 WP_000021109.1 Asp23/Gls24 family envelope stress response protein -
  EQK03_RS13850 - 2692057..2693733 (+) 1677 WP_000027129.1 DAK2 domain-containing protein -
  EQK03_RS13855 recG 2694024..2696072 (+) 2049 WP_001000813.1 ATP-dependent DNA helicase RecG -
  EQK03_RS13860 fapR 2696161..2696754 (+) 594 WP_157418521.1 transcription factor FapR -
  EQK03_RS13865 plsX 2696751..2697743 (+) 993 WP_000684100.1 phosphate acyltransferase PlsX -
  EQK03_RS13870 fabD 2697758..2698702 (+) 945 WP_157418522.1 ACP S-malonyltransferase -
  EQK03_RS13875 fabG 2698702..2699442 (+) 741 WP_000911773.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  EQK03_RS13880 acpP 2699512..2699745 (+) 234 WP_000786062.1 acyl carrier protein -
  EQK03_RS13885 rncS 2699804..2700541 (+) 738 WP_001146875.1 ribonuclease III -
  EQK03_RS13890 smc 2700688..2704257 (+) 3570 WP_000478974.1 chromosome segregation protein SMC -
  EQK03_RS13895 ftsY 2704273..2705262 (+) 990 WP_000007655.1 signal recognition particle-docking protein FtsY -
  EQK03_RS13900 - 2705396..2705728 (+) 333 WP_000891062.1 putative DNA-binding protein -
  EQK03_RS13905 ffh 2705741..2707090 (+) 1350 WP_157418523.1 signal recognition particle protein -
  EQK03_RS13910 rpsP 2707192..2707464 (+) 273 WP_000268750.1 30S ribosomal protein S16 -
  EQK03_RS13915 - 2707479..2707706 (+) 228 WP_000737401.1 KH domain-containing protein -
  EQK03_RS13920 rimM 2707828..2708343 (+) 516 WP_000170278.1 ribosome maturation factor RimM -
  EQK03_RS13925 trmD 2708343..2709077 (+) 735 WP_000686903.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  EQK03_RS13930 rplS 2709224..2709568 (+) 345 WP_001186516.1 50S ribosomal protein L19 -
  EQK03_RS13935 lepB 2709670..2710221 (+) 552 WP_000711853.1 signal peptidase I -
  EQK03_RS13940 ylqF 2710242..2711132 (+) 891 WP_000236704.1 ribosome biogenesis GTPase YlqF -
  EQK03_RS13945 - 2711189..2711962 (+) 774 WP_001194265.1 ribonuclease HII -
  EQK03_RS13950 sucC 2712157..2713317 (+) 1161 WP_001020791.1 ADP-forming succinate--CoA ligase subunit beta -
  EQK03_RS13955 sucD 2713337..2714239 (+) 903 WP_000115178.1 succinate--CoA ligase subunit alpha -
  EQK03_RS13960 dprA 2714328..2715197 (+) 870 WP_000818043.1 DNA-processing protein DprA -
  EQK03_RS13965 topA 2715342..2717420 (+) 2079 WP_001286963.1 type I DNA topoisomerase -
  EQK03_RS13970 trmFO 2717469..2718773 (+) 1305 WP_000213002.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  EQK03_RS13975 xerC 2718839..2719738 (+) 900 WP_001101243.1 tyrosine recombinase XerC -
  EQK03_RS13980 hslV 2719781..2720323 (+) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  EQK03_RS13985 hslU 2720346..2721737 (+) 1392 WP_000550078.1 ATP-dependent protease ATPase subunit HslU -
  EQK03_RS13990 codY 2721815..2722594 (+) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EQK03_RS13995 rpsB 2722941..2723642 (+) 702 WP_000111485.1 30S ribosomal protein S2 -
  EQK03_RS14000 tsf 2723746..2724633 (+) 888 WP_001018578.1 translation elongation factor Ts -
  EQK03_RS14005 pyrH 2724700..2725422 (+) 723 WP_000042668.1 UMP kinase -
  EQK03_RS14010 frr 2725425..2725982 (+) 558 WP_157418524.1 ribosome recycling factor -
  EQK03_RS14015 uppS 2726068..2726844 (+) 777 WP_000971296.1 isoprenyl transferase -
  EQK03_RS14020 cdsA 2726862..2727653 (+) 792 WP_000813594.1 phosphatidate cytidylyltransferase -
  EQK03_RS14025 dxr 2727677..2728819 (+) 1143 WP_000790373.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  EQK03_RS14030 rseP 2728837..2730093 (+) 1257 WP_001090243.1 RIP metalloprotease RseP -
  EQK03_RS14035 - 2730203..2731903 (+) 1701 WP_000814300.1 proline--tRNA ligase -
  EQK03_RS14040 - 2732028..2736329 (+) 4302 WP_000060005.1 PolC-type DNA polymerase III -
  EQK03_RS14045 rimP 2736666..2737136 (+) 471 WP_000359096.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=363468 EQK03_RS13990 WP_000421290.1 2721815..2722594(+) (codY) [Bacillus cereus strain DLOU-Weihai]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=363468 EQK03_RS13990 WP_000421290.1 2721815..2722594(+) (codY) [Bacillus cereus strain DLOU-Weihai]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment