Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   EUC40_RS05050 Genome accession   NZ_CP040336
Coordinates   981766..984105 (+) Length   779 a.a.
NCBI ID   WP_156573943.1    Uniprot ID   -
Organism   Bacillus luti strain FJ     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 976766..989105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC40_RS05035 - 977798..978082 (+) 285 WP_000884550.1 post-transcriptional regulator -
  EUC40_RS05040 secDF 978352..980616 (+) 2265 WP_156573939.1 protein translocase subunit SecDF -
  EUC40_RS05045 - 980771..981664 (+) 894 WP_156573941.1 cation diffusion facilitator family transporter -
  EUC40_RS05050 recJ 981766..984105 (+) 2340 WP_156573943.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  EUC40_RS05055 - 984153..984665 (+) 513 WP_000346220.1 adenine phosphoribosyltransferase -
  EUC40_RS05060 relA 984876..987059 (+) 2184 WP_001262804.1 GTP diphosphokinase -
  EUC40_RS05065 - 987077..987517 (+) 441 WP_001266956.1 D-tyrosyl-tRNA(Tyr) deacylase -
  EUC40_RS26885 - 987735..987911 (+) 177 WP_002015300.1 hypothetical protein -

Sequence

Protein


Download         Length: 779 a.a.        Molecular weight: 88124.72 Da        Isoelectric Point: 4.9683

>NTDB_id=363339 EUC40_RS05050 WP_156573943.1 981766..984105(+) (recJ) [Bacillus luti strain FJ]
MLQPKTRWKEKEYNEERVSELASKLQLSPLVISLFLGRGLDTEDKILDFLNTENQEFHDPFLLEGMDRTVERVNKAIQNG
EQILIFGDYDADGVSSTTVLYLALKELGADVEFYIPNRFTEGYGPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKEL
GIDLIITDHHEPPPELPEALAIIHPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPEHLLEIAVIGTVADLVSLHGENRLL
VKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDAAPAVHLLLSEDPEEAKELAEEIDELNKL
RKDIVKQITEEAIAEVENHFPPEDNKVLVLAKEGWNPGVIGIVASKLVERFYRPTIVLSIDPVKETAKGSARSIAGFDLF
ANLSDCRELLPHFGGHPMAAGMTLHMNDVEELRRRLNEQADAILTEADFIPITAVDAFCKVEDVTLAAIEDMQKLAPFGV
GNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQATLDTIGFGFGAYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQ
DIAVEAWQLFDWRSMRNVEANLAELPKEKITMVYFSEDVLNKFSLEDYKEQLMHASEVTHLDDQYIVLLDLPKGTDELRE
LFKVGFPSRIYALFYQENNHLFSTIPTREHFKWYYSFLNQKTPFSLRQYGEQLCRHKGWSKDTVNFMTQVFFELEFVTIK
DGVIFMADKKQKRDLIESNTYREKMNHLQLEKELVYSTYQQLYTWFETIRNHKEVEQLG

Nucleotide


Download         Length: 2340 bp        

>NTDB_id=363339 EUC40_RS05050 WP_156573943.1 981766..984105(+) (recJ) [Bacillus luti strain FJ]
GTGTTACAACCGAAGACGCGTTGGAAAGAAAAAGAATATAATGAAGAGCGAGTGAGTGAATTAGCAAGTAAATTGCAATT
ATCACCTCTTGTTATCTCTTTATTCCTCGGTAGAGGACTAGATACAGAAGATAAGATTTTAGATTTTTTAAATACAGAAA
ATCAAGAATTCCATGATCCATTTTTATTAGAAGGAATGGACCGAACAGTAGAACGTGTAAATAAGGCGATTCAAAATGGA
GAGCAAATATTAATATTTGGTGATTATGATGCGGACGGAGTAAGTAGTACGACGGTATTATATCTTGCTCTGAAAGAATT
AGGTGCAGATGTAGAATTTTACATTCCGAACCGTTTTACAGAAGGCTATGGACCGAATGAAGAAGCGTTTCGTTGGGCGC
ATAGTGCGGGGTTCTCATTAATTATTACTGTCGATACTGGTATTGCAGCAGTACACGAAGCGAAGGTAGCGAAGGAGCTC
GGAATAGATCTTATTATTACAGATCACCATGAGCCACCGCCAGAGTTACCAGAGGCACTTGCGATTATTCATCCGAAACT
AGATGGTGGTGTGTATCCATTTCACTATTTAGCGGGTGTAGGTGTTGCGTTTAAAGTTGCACATGCACTACTAGGCCGTG
TGCCAGAACATTTATTAGAAATTGCAGTAATTGGTACAGTAGCCGATTTAGTGTCACTTCATGGTGAAAATAGGTTGCTA
GTGAAGCGCGGTTTAAAGCATATGCGCATGACGAAAAATATCGGTTTAAAGGCATTGTTTAAAGTTGCTAACGTTTCGCA
AAGTGAAATTACTGAGGAAAGCATAGGCTTCTCAATTGCGCCACGTATTAATGCAGTTGGACGTTTAGAAGATGCAGCGC
CGGCTGTACACCTTTTATTATCAGAGGATCCAGAGGAAGCGAAAGAACTGGCTGAAGAAATTGATGAGCTGAATAAACTG
CGAAAAGACATTGTAAAACAAATTACAGAAGAAGCTATCGCTGAAGTTGAAAATCATTTCCCGCCAGAAGATAATAAAGT
GTTAGTGCTTGCAAAAGAAGGTTGGAATCCAGGAGTAATTGGGATTGTCGCTTCTAAATTAGTTGAGCGCTTTTATCGTC
CAACAATTGTATTAAGTATTGATCCTGTAAAAGAAACAGCGAAGGGCTCAGCACGTAGTATTGCAGGATTTGATTTATTT
GCAAACTTGTCAGATTGTAGAGAGTTATTGCCGCACTTCGGAGGGCATCCAATGGCGGCCGGAATGACGCTTCATATGAA
TGATGTAGAGGAATTACGTCGCCGTTTAAATGAGCAAGCAGATGCAATTTTAACAGAAGCAGACTTCATTCCAATTACAG
CCGTTGATGCTTTTTGTAAAGTGGAGGACGTAACACTTGCAGCAATTGAGGATATGCAAAAGTTGGCGCCATTTGGTGTT
GGAAATCCGAAACCGCGTATTGCAGTGAAAGATGCTGAGCTAGAAAGTATTCGTGCAATTGGATCAGACGGTTCTCATTT
GAAAATGGCTCTTCGTGATGGACAAGCAACACTAGACACGATTGGATTTGGGTTTGGTGCGTATGCAAAAGAAATTTCTC
CAGTTGCAAAGGTATCTGTAATAGGAGAGGCATCCATCAATGAATGGAATAATTTTAAAAAGCCACAATTAATGGTACAA
GATATTGCTGTAGAGGCTTGGCAATTATTTGATTGGCGTAGTATGCGTAATGTAGAAGCGAATTTAGCAGAACTTCCGAA
AGAGAAAATAACAATGGTGTATTTTTCGGAAGATGTATTGAATAAATTTTCTCTAGAAGACTATAAGGAGCAGCTCATGC
ATGCATCCGAAGTAACGCATTTAGATGATCAATATATTGTGTTACTCGATTTGCCAAAAGGAACAGATGAATTACGTGAG
TTATTTAAAGTAGGATTCCCATCGCGAATCTATGCGTTATTTTATCAAGAGAATAATCATTTATTTAGTACGATCCCAAC
GAGGGAACACTTTAAATGGTACTATTCTTTCTTGAACCAAAAAACACCATTTTCTTTAAGACAATATGGTGAACAGCTAT
GTCGTCATAAAGGTTGGTCAAAAGATACAGTAAATTTCATGACACAGGTGTTTTTTGAGTTAGAATTTGTTACAATAAAA
GATGGCGTCATTTTTATGGCAGACAAAAAACAAAAGCGTGATTTAATTGAATCGAACACATATCGTGAGAAAATGAACCA
CTTACAATTAGAAAAAGAATTGGTTTATAGCACATATCAGCAATTATATACATGGTTTGAAACGATTCGTAATCATAAAG
AAGTAGAACAGTTAGGGTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(314-439)

RecJ OB domain (RecJ_OB)

(455-561)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.713

99.358

0.524

Multiple sequence alignment