Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EUC39_RS13195 Genome accession   NZ_CP040334
Coordinates   2567518..2568297 (+) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus cereus strain DLOU-Changhai     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2562518..2573297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC39_RS13175 trmFO 2563172..2564476 (+) 1305 WP_000213006.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  EUC39_RS13180 xerC 2564542..2565441 (+) 900 WP_157417660.1 tyrosine recombinase XerC -
  EUC39_RS13185 hslV 2565484..2566026 (+) 543 WP_000526274.1 ATP-dependent protease proteolytic subunit HslV -
  EUC39_RS13190 hslU 2566049..2567440 (+) 1392 WP_000550085.1 ATP-dependent protease ATPase subunit HslU -
  EUC39_RS13195 codY 2567518..2568297 (+) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EUC39_RS13200 rpsB 2568647..2569348 (+) 702 WP_000111485.1 30S ribosomal protein S2 -
  EUC39_RS13205 tsf 2569452..2570339 (+) 888 WP_016080531.1 translation elongation factor Ts -
  EUC39_RS13210 pyrH 2570406..2571128 (+) 723 WP_000042669.1 UMP kinase -
  EUC39_RS13215 frr 2571131..2571688 (+) 558 WP_000531505.1 ribosome recycling factor -
  EUC39_RS13220 uppS 2571774..2572550 (+) 777 WP_000971296.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=363308 EUC39_RS13195 WP_000421290.1 2567518..2568297(+) (codY) [Bacillus cereus strain DLOU-Changhai]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=363308 EUC39_RS13195 WP_000421290.1 2567518..2568297(+) (codY) [Bacillus cereus strain DLOU-Changhai]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCGGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGTGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGACGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGCATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGTGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment