Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   EUC39_RS10315 Genome accession   NZ_CP040334
Coordinates   2040756..2043092 (+) Length   778 a.a.
NCBI ID   WP_157417527.1    Uniprot ID   -
Organism   Bacillus cereus strain DLOU-Changhai     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2035756..2048092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC39_RS10295 cymR 2037162..2037578 (+) 417 WP_000704116.1 cysteine metabolism transcriptional regulator CymR -
  EUC39_RS10300 - 2037614..2038759 (+) 1146 WP_157417525.1 cysteine desulfurase family protein -
  EUC39_RS10305 mnmA 2038776..2039891 (+) 1116 WP_001038010.1 tRNA 2-thiouridine(34) synthase MnmA -
  EUC39_RS10310 - 2040001..2040660 (+) 660 WP_000066411.1 tetratricopeptide repeat protein -
  EUC39_RS10315 recD2 2040756..2043092 (+) 2337 WP_157417527.1 ATP-dependent RecD-like DNA helicase Machinery gene
  EUC39_RS10320 - 2043220..2043408 (+) 189 WP_000469281.1 hypothetical protein -
  EUC39_RS10325 - 2043427..2043555 (+) 129 WP_001053553.1 YrzQ family protein -
  EUC39_RS10330 - 2043603..2043815 (-) 213 WP_000242539.1 hypothetical protein -
  EUC39_RS10335 - 2043992..2045059 (+) 1068 WP_000793129.1 AI-2E family transporter -
  EUC39_RS10340 - 2045104..2045448 (-) 345 WP_000209466.1 PH domain-containing protein -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87524.04 Da        Isoelectric Point: 5.2628

>NTDB_id=363300 EUC39_RS10315 WP_157417527.1 2040756..2043092(+) (recD2) [Bacillus cereus strain DLOU-Changhai]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYMVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLVRETMSLLNNQEGRVTEEDIIGCIETMQSEGKVIIEEERVYLATLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLNVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPSEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKDGTLPPDLAQNKKDRSFISCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQQVFNPKREKSKEIQYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEVAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=363300 EUC39_RS10315 WP_157417527.1 2040756..2043092(+) (recD2) [Bacillus cereus strain DLOU-Changhai]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAATTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACGTATGACGAAAAGAAAGTAATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACATTGACAGGTCACTTTAAGGACCATCCAAAGTATGGA
AAACAATATATGGTTGAAACATTTAAAAAAGAATTGCCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCGGAAAAAATTGTGGATCATCTCGGGGAACATGCTATTTCTAAAATTATGGATG
ACCCTGAGGCGTTAAATGGTGTTGTTAACAAACAAAAGGCTCAGGAAATATATGAGACAATTGTTGAACATCAAGGATTA
GAGAAAGTAATGAGCTTTTTAAATGGTTACGGTTTTGGAACGAAACTTTCTATTAAGATTTACCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCGTATCAACTTATTGAAGAAGTGGACGGGATTGGTTTTGGACGAGCGGATGATA
TAGGGCGTGCGTTAGGGATATCGGGTAATCACGACGACCGTGTACGAGCGGGATGTTTTTACACATTAGAGAATGTCTCA
TTGCAACTTGGTCACGTTTATATGAGGAAAGATCAACTTGTAAGAGAAACGATGTCACTTTTAAACAATCAAGAAGGAAG
AGTGACTGAAGAAGATATTATAGGTTGTATTGAAACGATGCAAAGTGAAGGGAAAGTCATCATAGAAGAAGAACGAGTGT
ATTTAGCAACTTTATTCTACTCTGAAAAAGGTGTTGTAAAGTCTATTCGTCGATTGATGAATCAAGAGGAAACACCTTCA
TTTCCTGAAGCAGAAGTGTTAAAAACATTAGGTGAAATTGAAGAACAGTTGAATGTACAATATGCACCGTTTCAGCAAGA
AGCGATTCAAACGGCACTTCATAAACCGATGATGTTATTAACAGGTGGACCAGGAACAGGAAAAACAACCGTTATTAAAG
GGATTGTTGAAATGTATGCGTCACTTCACGGATTATCGTTAAATCCGAGTGAATACAGTGATGATAACCCATTTCCAATA
CTATTAACAGCTCCAACAGGAAGAGCAGCGAAGCGGATGAGTGAATCGACAGGACTTCCAGCTTGCACAATTCACCGTTT
GCTTGGCTGGACGCCAGAAGGATCTTTCCAGCGTAATGAAACGGATCCTGTCCAAGGTAAGCTCCTTATTATCGATGAAT
TTTCAATGGTTGATATTTGGCTCGCAAATCAGCTATTTAAGTCGCTACCGACGAATATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAGTTGCCATCTGTAGGACCTGGACAAGTATTAAAAGATTTATTAAATGCAGGTGCAGTTCCGACAGTGAAGCT
TACTGAAATTTATCGTCAAGCAGAAGGCTCATCTGTTATTCAACTTGCCCATGCGATCAAAGACGGCACACTCCCGCCAG
ATTTAGCGCAAAATAAAAAAGATCGTTCGTTTATCAGCTGTACAGGGGCTCAAATTGTTGAGGTTGTGAAAAAAGTTTGC
GAAAATGCTAAAACAAAAGGCTTTAGTGCAAGGGATGTTCAAGTATTAGCACCGATGTACCGCGGGCCTGCTGGTATTAA
TGTATTAAACGAAGCGCTGCAACAAGTTTTTAACCCGAAAAGGGAAAAGAGTAAAGAAATCCAGTACGGTGATGTTGTAT
ACCGAAGAGGCGATAAAGTACTGCAACTTGTTAATCAGCCGGAGAGCCAAGTGTTTAATGGTGATATCGGAGAAATTGTT
TCGGTGTTTTATGCGAAAGAAAACGTCGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAGGTAACGTATAC
AAAGCCGGATTTAAATCAAATTACACATGCATATTGTTGTTCGATTCATAAATCACAAGGTAGTGAATTTCCGATTGTTA
TTATGCCGATTGTGAAAAGTTACAACCGTATGTTACGCCGTAATTTAATTTACACGGGCATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGTAGCTTTCCAATCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACAACTTTAGC
TAGTCGCTTGCAGGAATCACAAGGAGAAGTACAGATGGTCACAGTTAATGGCGAGGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

AAA domain (AAA_30)

(341-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.016

100

0.58

Multiple sequence alignment