Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   FD725_RS28955 Genome accession   NZ_CP040297
Coordinates   6697526..6698632 (+) Length   368 a.a.
NCBI ID   WP_179051314.1    Uniprot ID   -
Organism   Nostoc sp. TCL26-01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6692526..6703632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD725_RS28930 (FD725_28915) secE 6692839..6693057 (-) 219 Protein_5739 preprotein translocase subunit SecE -
  FD725_RS28940 (FD725_28925) rplS 6693471..6693833 (-) 363 WP_179051311.1 50S ribosomal protein L19 -
  FD725_RS28945 (FD725_28930) - 6694041..6694985 (+) 945 WP_179051312.1 glycosyltransferase family 2 protein -
  FD725_RS28950 (FD725_28935) - 6695944..6697242 (-) 1299 WP_179051313.1 sugar ABC transporter substrate-binding protein -
  FD725_RS28955 (FD725_28940) pilM 6697526..6698632 (+) 1107 WP_179051314.1 type IV pilus assembly protein PilM Machinery gene
  FD725_RS28960 (FD725_28945) - 6698636..6699406 (+) 771 WP_179051315.1 PilN domain-containing protein -
  FD725_RS28965 (FD725_28950) - 6699403..6700161 (+) 759 WP_179051316.1 pilus assembly protein PilO -
  FD725_RS28970 (FD725_28955) - 6700282..6702642 (+) 2361 WP_179051317.1 type IV pilus secretin family protein -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 40358.24 Da        Isoelectric Point: 4.4761

>NTDB_id=363043 FD725_RS28955 WP_179051314.1 6697526..6698632(+) (pilM) [Nostoc sp. TCL26-01]
MVKSFSSLFGKSHKGVGIEIAPERVNVVQIRKQRQGLKLESLTSVAVPEGIVADGQITDPPAMAQLIQQALAESKIKTSR
VATGVPGRDSIVRIIPVPAELDDKELRDMVLNHEAGLYLPYPREEADVDYQKLGYFVDEDGIEKVQVLLVATRKEVTDTY
IRTFEQAGLQISVLEINSFALIRTIRDQLRQFGPQEAVVLVDIEFDSTEIAIVINGVPQFSRTVPIGTYQMQMAMARAMS
LPTSRDMEILQGITIPVNSGDGEKTGVTEADPGLASVLRILGELTDELRRSIDFYLNQSENLEVAQILLGGPGGGLQQLD
EFFTQRLSIPTSQIDPIGSLSLQVDPEKYPSTQRSGLAIILGLGMREV

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=363043 FD725_RS28955 WP_179051314.1 6697526..6698632(+) (pilM) [Nostoc sp. TCL26-01]
GTGGTGAAAAGTTTCAGTAGTCTATTCGGCAAATCTCACAAAGGGGTGGGGATCGAAATTGCGCCAGAACGGGTGAATGT
GGTGCAGATACGCAAACAGCGTCAGGGATTGAAACTAGAATCCCTCACATCAGTCGCAGTTCCTGAAGGAATTGTAGCCG
ATGGGCAAATCACTGATCCCCCAGCAATGGCGCAATTAATTCAGCAGGCTTTGGCGGAGAGTAAAATCAAAACTTCGCGG
GTAGCAACTGGCGTACCAGGAAGAGATTCGATTGTGCGGATCATCCCTGTACCCGCCGAGTTGGATGACAAAGAATTGCG
GGATATGGTGTTGAATCACGAAGCCGGGTTGTATTTACCCTATCCCCGTGAAGAGGCTGACGTAGATTATCAGAAACTTG
GGTACTTTGTAGATGAAGACGGCATCGAAAAAGTGCAGGTACTTTTAGTGGCTACTCGCAAGGAGGTAACAGATACATAT
ATTCGTACTTTTGAGCAAGCAGGATTGCAAATCAGCGTCTTAGAGATTAACAGTTTTGCCCTGATTCGGACAATTCGGGA
TCAACTGCGGCAATTTGGGCCACAAGAAGCAGTTGTATTAGTTGATATCGAGTTTGACAGTACAGAAATTGCGATCGTCA
TTAACGGAGTACCGCAATTTTCTCGCACTGTGCCAATTGGGACTTATCAAATGCAGATGGCAATGGCTAGGGCAATGAGT
TTACCCACATCACGAGACATGGAAATTTTACAGGGAATTACGATTCCGGTAAATTCTGGGGATGGTGAGAAAACTGGGGT
GACAGAAGCTGATCCTGGACTGGCGAGTGTGTTGCGAATTTTGGGAGAACTCACAGACGAGTTACGCCGTTCTATCGATT
TTTACTTAAATCAGAGTGAAAACTTAGAAGTAGCGCAGATTTTGCTGGGAGGGCCTGGAGGTGGACTGCAACAGCTAGAT
GAATTTTTTACTCAACGATTGAGTATACCAACTAGCCAAATAGATCCTATAGGGTCTTTGTCATTGCAGGTTGATCCGGA
AAAGTACCCCTCTACACAACGTTCTGGTTTAGCGATCATTCTTGGTTTAGGGATGCGGGAGGTTTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(17-238)

Type IV pilus assembly protein PilM; (PilM_2)

(283-367)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

65.668

99.728

0.655

Multiple sequence alignment