Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   E3S88_RS04400 Genome accession   NZ_CP047792
Coordinates   888530..889303 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain UP_794     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 883530..894303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S88_RS04380 (E3S88_04380) trmFO 883874..885181 (+) 1308 WP_160194527.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  E3S88_RS04385 (E3S88_04385) xerC 885598..886494 (+) 897 WP_001015609.1 tyrosine recombinase XerC -
  E3S88_RS04390 (E3S88_04390) hslV 886491..887036 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  E3S88_RS04395 (E3S88_04395) hslU 887102..888505 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  E3S88_RS04400 (E3S88_04400) codY 888530..889303 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  E3S88_RS04405 (E3S88_04405) - 889354..889446 (+) 93 WP_031788481.1 hypothetical protein -
  E3S88_RS04410 (E3S88_04410) rpsB 889645..890412 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  E3S88_RS04415 (E3S88_04415) - 890446..890559 (+) 114 WP_001789890.1 hypothetical protein -
  E3S88_RS04420 (E3S88_04420) tsf 890594..891475 (+) 882 WP_000201387.1 translation elongation factor Ts -
  E3S88_RS04425 (E3S88_04425) pyrH 891612..892334 (+) 723 WP_000057330.1 UMP kinase -
  E3S88_RS04430 (E3S88_04430) frr 892353..892907 (+) 555 WP_001280006.1 ribosome recycling factor -
  E3S88_RS04435 (E3S88_04435) - 893280..894050 (+) 771 WP_061740171.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=362374 E3S88_RS04400 WP_000055337.1 888530..889303(+) (codY) [Staphylococcus aureus strain UP_794]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=362374 E3S88_RS04400 WP_000055337.1 888530..889303(+) (codY) [Staphylococcus aureus strain UP_794]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACACGATG
ACTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTTTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428