Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FDV78_RS17100 Genome accession   NZ_CP040101
Coordinates   3565916..3566641 (+) Length   241 a.a.
NCBI ID   WP_179001267.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LVP2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3560916..3571641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDV78_RS17085 (FDV78_18230) - 3562021..3564342 (+) 2322 WP_179001263.1 Tex family protein -
  FDV78_RS17090 (FDV78_18235) - 3564476..3564940 (-) 465 WP_005459035.1 hypothetical protein -
  FDV78_RS17095 (FDV78_18240) bioH 3565064..3565831 (-) 768 WP_179001265.1 pimeloyl-ACP methyl ester esterase BioH -
  FDV78_RS17100 (FDV78_18245) comF 3565916..3566641 (+) 726 WP_179001267.1 ComF family protein Machinery gene
  FDV78_RS17105 (FDV78_18250) nfuA 3566739..3567323 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  FDV78_RS17110 (FDV78_18255) nudE 3567544..3568113 (+) 570 WP_021448936.1 ADP compounds hydrolase NudE -
  FDV78_RS17115 (FDV78_18260) cysQ 3568154..3568981 (+) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FDV78_RS17120 (FDV78_18265) - 3569268..3570029 (-) 762 WP_140084660.1 type II secretion system protein N -
  FDV78_RS17125 (FDV78_18270) - 3570031..3570522 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27798.96 Da        Isoelectric Point: 8.9878

>NTDB_id=362158 FDV78_RS17100 WP_179001267.1 3565916..3566641(+) (comF) [Vibrio parahaemolyticus strain LVP2]
MLSHHWQNIMHRVLSSQCGLCRFPIQAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYYFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGD
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=362158 FDV78_RS17100 WP_179001267.1 3565916..3566641(+) (comF) [Vibrio parahaemolyticus strain LVP2]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TGCCGCTCAACCCAATGCGCTGCGCTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCTGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACTATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAACCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGAT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

48.333

99.585

0.481

Multiple sequence alignment