Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FDP11_RS23765 Genome accession   NZ_CP040100
Coordinates   3214771..3215496 (+) Length   241 a.a.
NCBI ID   WP_178982970.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LVP1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3209771..3220496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP11_RS23750 (FDP11_25470) - 3210874..3213195 (+) 2322 WP_025592754.1 Tex family protein -
  FDP11_RS23755 (FDP11_25475) - 3213331..3213795 (-) 465 WP_005459035.1 hypothetical protein -
  FDP11_RS23760 (FDP11_25480) bioH 3213919..3214686 (-) 768 WP_021453248.1 pimeloyl-ACP methyl ester esterase BioH -
  FDP11_RS23765 (FDP11_25485) comF 3214771..3215496 (+) 726 WP_178982970.1 ComF family protein Machinery gene
  FDP11_RS23770 (FDP11_25490) nfuA 3215594..3216178 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  FDP11_RS23775 (FDP11_25495) nudE 3216399..3216968 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  FDP11_RS23780 (FDP11_25500) cysQ 3217010..3217837 (+) 828 WP_017449059.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FDP11_RS23785 (FDP11_25505) - 3218123..3218884 (-) 762 WP_178982972.1 type II secretion system protein N -
  FDP11_RS23790 (FDP11_25510) - 3218886..3219377 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27717.97 Da        Isoelectric Point: 8.9991

>NTDB_id=362113 FDP11_RS23765 WP_178982970.1 3214771..3215496(+) (comF) [Vibrio parahaemolyticus strain LVP1]
MLSHHWQNIMHRVLSSQCGLCRFPILAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQIWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=362113 FDP11_RS23765 WP_178982970.1 3214771..3215496(+) (comF) [Vibrio parahaemolyticus strain LVP1]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCTGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCTGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGA
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAATATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTATTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

73.029

100

0.73
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485

Multiple sequence alignment