Detailed information NTG0361959

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: FDN00_RS11680
• Genome accession: NZ_CP040084
• Coordinates: 2423344..2424045 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594589.1
• Uniprot ID: A0A9P3CZ31
• Organism: Acinetobacter baumannii strain VB33071
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2418344..2429045

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FDN00_RS11650 (FDN00_11650)	-	2418650..2419093 (-)	444	WP_001246675.1	SRPBCC family protein	-
FDN00_RS11655 (FDN00_11655)	tadA	2419163..2419666 (-)	504	WP_000033178.1	tRNA adenosine(34) deaminase TadA	-
FDN00_RS11660 (FDN00_11660)	-	2419673..2420797 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
FDN00_RS11665 (FDN00_11665)	ung	2420794..2421507 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
FDN00_RS11670 (FDN00_11670)	-	2421558..2422154 (-)	597	WP_000908452.1	6-pyruvoyl trahydropterin synthase family protein	-
FDN00_RS11675 (FDN00_11675)	gspK	2422385..2423344 (-)	960	WP_000301476.1	type II secretion system minor pseudopilin GspK	-
FDN00_RS11680 (FDN00_11680)	xcpW	2423344..2424045 (-)	702	WP_000594589.1	type II secretion system minor pseudopilin GspJ	Machinery gene
FDN00_RS11685 (FDN00_11685)	xcpV	2424045..2424425 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
FDN00_RS11690 (FDN00_11690)	-	2424415..2424969 (-)	555	WP_000841373.1	type II secretion system protein	-
FDN00_RS11695 (FDN00_11695)	-	2424979..2425587 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
FDN00_RS11700 (FDN00_11700)	-	2425625..2426398 (-)	774	WP_000497298.1	TatD family hydrolase	-
FDN00_RS11705 (FDN00_11705)	-	2426416..2426757 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
FDN00_RS11710 (FDN00_11710)	-	2426769..2427749 (-)	981	WP_001075411.1	DNA polymerase III subunit delta'	-
FDN00_RS11715 (FDN00_11715)	kdsB	2427761..2428522 (-)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26639.58 Da
• Isoelectric Point: 9.3468

>NTDB_id=361959 FDN00_RS11680 WP_000594589.1 2423344..2424045(-) (xcpW) [Acinetobacter baumannii strain VB33071]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=361959 FDN00_RS11680 WP_000594589.1 2423344..2424045(-) (xcpW) [Acinetobacter baumannii strain VB33071]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996