Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYG   Type   Machinery gene
Locus tag   GALLO_RS00660 Genome accession   NC_013798
Coordinates   104189..104503 (+) Length   104 a.a.
NCBI ID   WP_009853235.1    Uniprot ID   -
Organism   Streptococcus gallolyticus UCN34     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 99189..109503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GALLO_RS00625 (GALLO_0086) - 100494..100862 (+) 369 WP_009853228.1 DUF1033 family protein -
  GALLO_RS00630 (GALLO_0087) comYA 100933..101874 (+) 942 WP_012961327.1 competence type IV pilus ATPase ComGA Machinery gene
  GALLO_RS00635 (GALLO_0088) comYB 101756..102841 (+) 1086 WP_012961328.1 competence type IV pilus assembly protein ComGB Machinery gene
  GALLO_RS00640 (GALLO_0089) comYC 102841..103134 (+) 294 WP_009853231.1 competence type IV pilus major pilin ComGC Machinery gene
  GALLO_RS00645 (GALLO_0090) comYD 103118..103549 (+) 432 WP_009853232.1 competence type IV pilus minor pilin ComGD Machinery gene
  GALLO_RS00650 (GALLO_0091) comGE 103503..103796 (+) 294 WP_012961329.1 competence type IV pilus minor pilin ComGE -
  GALLO_RS00655 (GALLO_0092) comYF 103750..104217 (+) 468 WP_012961330.1 competence type IV pilus minor pilin ComGF Machinery gene
  GALLO_RS00660 (GALLO_0093) comYG 104189..104503 (+) 315 WP_009853235.1 competence type IV pilus minor pilin ComGG Machinery gene
  GALLO_RS00665 (GALLO_0094) comYH 104576..105532 (+) 957 WP_009853236.1 class I SAM-dependent methyltransferase Machinery gene
  GALLO_RS00670 (GALLO_0095) - 105585..106784 (+) 1200 WP_012961331.1 acetate kinase -
  GALLO_RS00675 (GALLO_0096) - 106946..107146 (+) 201 WP_012961332.1 helix-turn-helix transcriptional regulator -
  GALLO_RS00680 (GALLO_0097) - 107156..107365 (+) 210 WP_009853239.1 hypothetical protein -
  GALLO_RS00685 (GALLO_0098) - 107378..107830 (+) 453 WP_009853240.1 hypothetical protein -
  GALLO_RS00690 (GALLO_0099) - 107842..108480 (+) 639 WP_009853241.1 CPBP family intramembrane glutamic endopeptidase -
  GALLO_RS00695 (GALLO_0100) proC 108540..109310 (-) 771 WP_009853242.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11942.84 Da        Isoelectric Point: 6.4574

>NTDB_id=36170 GALLO_RS00660 WP_009853235.1 104189..104503(+) (comYG) [Streptococcus gallolyticus UCN34]
MFTLLKRQVKAGILIYALLMAAIFALLLQFYLGRVVAMERQHQAQLSASQAYLMAELTRDLAKEDTGHLTFDQGVADYNF
QDNQLQVVVKLPNQQEFDYVFQRA

Nucleotide


Download         Length: 315 bp        

>NTDB_id=36170 GALLO_RS00660 WP_009853235.1 104189..104503(+) (comYG) [Streptococcus gallolyticus UCN34]
TTGTTTACACTTTTGAAACGGCAAGTTAAGGCAGGGATTTTAATCTATGCTTTGCTTATGGCAGCAATTTTTGCCTTGCT
TTTGCAATTTTATCTAGGACGTGTCGTGGCAATGGAGCGACAACACCAAGCGCAGCTATCTGCTAGTCAGGCTTATTTAA
TGGCAGAATTAACAAGAGATTTGGCAAAAGAGGATACTGGTCACCTTACATTTGACCAAGGAGTAGCTGACTACAACTTC
CAAGACAATCAATTGCAGGTGGTGGTCAAACTGCCTAATCAACAAGAATTTGACTATGTTTTCCAAAGAGCCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYG Streptococcus mutans UA140

56.122

94.231

0.529
  comYG Streptococcus mutans UA159

56.122

94.231

0.529

Multiple sequence alignment