Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BPOF4_RS19120 Genome accession   NC_013791
Coordinates   3842880..3843371 (-) Length   163 a.a.
NCBI ID   WP_012960902.1    Uniprot ID   D3FQF9
Organism   Alkalihalophilus pseudofirmus OF4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3837880..3848371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPOF4_RS19100 (BpOF4_07845) rplI 3838928..3839374 (-) 447 WP_012960898.1 50S ribosomal protein L9 -
  BPOF4_RS19105 (BpOF4_07850) - 3839376..3841340 (-) 1965 WP_012960899.1 DHH family phosphoesterase -
  BPOF4_RS19110 (BpOF4_07855) - 3841352..3842290 (-) 939 WP_012960900.1 YybS family protein -
  BPOF4_RS19115 (BpOF4_07860) rpsR 3842574..3842807 (-) 234 WP_012960901.1 30S ribosomal protein S18 -
  BPOF4_RS19120 (BpOF4_07865) ssbA 3842880..3843371 (-) 492 WP_012960902.1 single-stranded DNA-binding protein Machinery gene
  BPOF4_RS19125 (BpOF4_07870) rpsF 3843398..3843685 (-) 288 WP_012960903.1 30S ribosomal protein S6 -
  BPOF4_RS19130 (BpOF4_07875) ychF 3844377..3845477 (-) 1101 WP_012960904.1 redox-regulated ATPase YchF -
  BPOF4_RS19135 (BpOF4_07880) - 3845631..3845831 (-) 201 WP_012960905.1 DUF951 domain-containing protein -
  BPOF4_RS19140 (BpOF4_07885) - 3845926..3846948 (-) 1023 WP_012960906.1 membrane protein -
  BPOF4_RS19145 (BpOF4_07890) yyaC 3847101..3847748 (+) 648 WP_012960907.1 spore protease YyaC -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17813.56 Da        Isoelectric Point: 4.7726

>NTDB_id=36161 BPOF4_RS19120 WP_012960902.1 3842880..3843371(-) (ssbA) [Alkalihalophilus pseudofirmus OF4]
MLNRVILVGRLTKDPELRYTPSGVAVANFTLAVNRTFSNQQGEREADFINCVVWRKPAENVANYLKKGSLAGVDGRIQTR
SYDNNEGRRVFITEVVAESVQFLEPRGASQGQGNAYAGGGAPTGGNDYSRQNQQPDRQSGGFNDDPFANDGKPIDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=36161 BPOF4_RS19120 WP_012960902.1 3842880..3843371(-) (ssbA) [Alkalihalophilus pseudofirmus OF4]
ATGCTAAACCGTGTCATACTAGTTGGACGTTTAACGAAAGATCCAGAGCTGCGTTATACGCCGAGTGGAGTAGCAGTAGC
GAACTTTACGCTCGCGGTAAACCGTACATTTTCAAATCAGCAAGGAGAGCGCGAAGCAGACTTCATCAATTGTGTTGTTT
GGCGTAAACCTGCTGAGAATGTGGCTAATTACCTTAAAAAAGGCAGCCTGGCTGGTGTAGACGGCCGAATCCAAACTAGA
AGCTATGACAACAATGAAGGCCGTCGTGTCTTTATTACAGAAGTTGTAGCGGAAAGTGTGCAATTCCTAGAACCAAGAGG
AGCAAGTCAAGGACAAGGAAATGCGTATGCAGGAGGCGGAGCACCAACTGGTGGAAACGATTATAGCAGGCAGAATCAAC
AACCAGATCGTCAATCTGGCGGATTTAACGATGATCCTTTTGCTAATGATGGCAAACCAATTGACATCTCGGATGACGAT
TTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3FQF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.614

100

0.73
  ssb Latilactobacillus sakei subsp. sakei 23K

53.488

100

0.564
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

65.031

0.417
  ssb Neisseria gonorrhoeae MS11

36

100

0.387
  ssb Vibrio cholerae strain A1552

34.659

100

0.374
  ssb Neisseria meningitidis MC58

34.302

100

0.362

Multiple sequence alignment