Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   E8N02_RS07140 Genome accession   NZ_CP040015
Coordinates   1397865..1398380 (-) Length   171 a.a.
NCBI ID   WP_002799196.1    Uniprot ID   Q0P8R6
Organism   Campylobacter jejuni subsp. jejuni strain LDG17f     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1392865..1403380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8N02_RS07125 (E8N02_07185) - 1392974..1394791 (-) 1818 WP_178887390.1 motility associated factor glycosyltransferase family protein -
  E8N02_RS07130 (E8N02_07190) - 1394788..1396611 (-) 1824 WP_178895700.1 motility associated factor glycosyltransferase family protein -
  E8N02_RS07135 (E8N02_07195) - 1396621..1397865 (-) 1245 WP_032584861.1 DUF2920 family protein -
  E8N02_RS07140 (E8N02_07200) ctsG 1397865..1398380 (-) 516 WP_002799196.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  E8N02_RS07145 (E8N02_07205) tsaD 1398381..1399388 (-) 1008 WP_002934877.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  E8N02_RS07150 (E8N02_07210) - 1399385..1400779 (-) 1395 WP_002934878.1 M99 family carboxypeptidase catalytic domain-containing protein -
  E8N02_RS07155 (E8N02_07215) dxr 1400781..1401851 (-) 1071 WP_002860792.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  E8N02_RS07160 (E8N02_07220) cdsA 1401848..1402573 (-) 726 WP_002875974.1 phosphatidate cytidylyltransferase -
  E8N02_RS07165 (E8N02_07225) - 1402582..1402920 (-) 339 WP_002934880.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.56 Da        Isoelectric Point: 6.4682

>NTDB_id=361588 E8N02_RS07140 WP_002799196.1 1397865..1398380(-) (ctsG) [Campylobacter jejuni subsp. jejuni strain LDG17f]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=361588 E8N02_RS07140 WP_002799196.1 1397865..1398380(-) (ctsG) [Campylobacter jejuni subsp. jejuni strain LDG17f]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGTTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942

Multiple sequence alignment