Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   BPOF4_RS04010 Genome accession   NC_013791
Coordinates   807290..809608 (+) Length   772 a.a.
NCBI ID   WP_012957787.1    Uniprot ID   D3FVY9
Organism   Alkalihalophilus pseudofirmus OF4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 802290..814608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPOF4_RS03985 (BpOF4_11815) - 803143..803838 (+) 696 WP_012957782.1 YczE/YyaS/YitT family protein -
  BPOF4_RS03990 (BpOF4_11820) cymR 803783..804202 (+) 420 WP_012957783.1 cysteine metabolism transcriptional regulator CymR -
  BPOF4_RS03995 (BpOF4_11825) - 804225..805388 (+) 1164 WP_012957784.1 cysteine desulfurase family protein -
  BPOF4_RS04000 (BpOF4_11830) mnmA 805410..806513 (+) 1104 WP_012957785.1 tRNA 2-thiouridine(34) synthase MnmA -
  BPOF4_RS04005 (BpOF4_11835) - 806591..807277 (+) 687 WP_012957786.1 tetratricopeptide repeat protein -
  BPOF4_RS04010 (BpOF4_11840) recD2 807290..809608 (+) 2319 WP_012957787.1 ATP-dependent RecD-like DNA helicase Machinery gene
  BPOF4_RS04015 (BpOF4_11845) - 809660..810136 (+) 477 WP_012957788.1 PRC-barrel domain-containing protein -
  BPOF4_RS04020 (BpOF4_11850) - 810150..810338 (+) 189 WP_012957789.1 hypothetical protein -
  BPOF4_RS04025 (BpOF4_11855) - 810364..810552 (+) 189 WP_012957790.1 DUF3918 family protein -
  BPOF4_RS04030 (BpOF4_11860) - 810683..811747 (+) 1065 WP_012957791.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 772 a.a.        Molecular weight: 86918.59 Da        Isoelectric Point: 5.1171

>NTDB_id=36132 BPOF4_RS04010 WP_012957787.1 807290..809608(+) (recD2) [Alkalihalophilus pseudofirmus OF4]
MDEQQSLEQDNGIERGYIKGEVLHLVFRNDENAYTVALIRVSETNEELKDKKITVVGILPQLDVAETFLFFGTITDHPRF
GQQYQVEQFRRDLPQTKNGIIQYLSSDRFPGIGKRTAETIVEVLGERAITRIVEDRAVLKAVPKLSKEKADQLYQQLIDQ
QGVEQVLMTLSKHGFGLELSMKVYQKYGFQALDIIQTNPYQLIADVEGIGFRKADLLGAAIGLTGNHPDRIRAGLLFVVQ
ELCLQDGHVYIEKEELIPHVKQLLSSPDASISTEEVEHELLTMEEEDALVLEETRVYIKSLYFAEKGIVSSVRRLMATEV
KDEFPESEFLKTLGELEEELKIEYAPQQKEAIQTALANPFMLLTGGPGTGKTTVIKGIVETYARLNGLSLDPKAYTKSNP
FPILLVAPTGRAAKRMSEATELPAVTIHRLLGWKGGNGGFEKGEHEQLEGELIIVDEVSMVDIWLANQLLKAIPKGMQVV
FVGDQDQLPSVGPGQVLKDFLDAEVVPTVPLTAIYRQKEGSSIIELAHEMKQGKMPSDLPEAKPDRRFFPCTTDHVQHVV
TQICENAIKKGYLARDIQVLAPMYKGQAGITELNRILQELFNPKTEQKRELLYGELAYRTGDVVLQLVNNPDENVYNGDR
GEIVAIFYAKENTEKQDQVVISFDGTEVVYNKKDLNQITHAYCCSIHKSQGSEFPIVVMPVVRNYSRMLRRNLIYTGITR
AKKFLLLCGELKSFHTAVTREDELIRYSMLKDKLVSLKQSQQEYENGNGQLT

Nucleotide


Download         Length: 2319 bp        

>NTDB_id=36132 BPOF4_RS04010 WP_012957787.1 807290..809608(+) (recD2) [Alkalihalophilus pseudofirmus OF4]
ATGGATGAACAACAATCCTTAGAACAAGATAACGGAATAGAGCGTGGCTATATAAAAGGCGAGGTTCTCCATCTCGTCTT
TAGAAATGATGAAAATGCCTACACTGTAGCTCTGATTCGGGTCAGTGAAACAAATGAAGAGCTAAAGGATAAGAAAATAA
CGGTAGTGGGAATCCTTCCGCAGCTGGATGTAGCAGAAACCTTTTTGTTTTTTGGGACCATCACTGACCATCCACGTTTT
GGACAGCAGTATCAAGTAGAGCAATTTAGACGAGATCTGCCTCAAACAAAGAACGGCATCATTCAATATCTTTCAAGTGA
TCGCTTCCCTGGGATCGGCAAGAGGACAGCAGAAACGATTGTTGAGGTATTAGGGGAAAGGGCCATTACTCGGATTGTTG
AAGACCGAGCTGTACTAAAAGCTGTACCAAAGCTCTCTAAAGAAAAAGCAGACCAATTATATCAGCAGCTCATAGACCAA
CAAGGAGTTGAACAGGTCCTAATGACGCTGTCAAAGCACGGATTTGGTCTTGAACTATCAATGAAGGTATATCAAAAGTA
TGGGTTTCAAGCACTTGATATTATTCAAACAAATCCTTATCAGCTGATTGCAGATGTAGAAGGGATCGGATTTAGGAAGG
CTGATTTACTTGGAGCTGCGATTGGTTTAACAGGGAATCACCCAGACAGGATCCGAGCGGGGCTTTTGTTTGTTGTACAA
GAATTATGCTTACAAGATGGACATGTCTATATCGAAAAAGAAGAATTGATCCCTCATGTAAAACAACTGTTATCGTCACC
AGATGCATCAATAAGTACAGAAGAAGTCGAGCATGAGCTTTTAACGATGGAAGAGGAGGATGCGCTTGTACTTGAGGAAA
CGCGCGTCTATATAAAATCACTGTATTTTGCTGAAAAAGGAATTGTCTCAAGTGTAAGGAGACTCATGGCTACAGAGGTT
AAGGATGAATTCCCGGAATCGGAGTTCTTAAAAACACTAGGCGAGCTTGAGGAAGAGTTAAAAATTGAATACGCACCGCA
GCAGAAAGAAGCGATTCAAACAGCGTTAGCTAATCCTTTTATGCTCCTTACAGGGGGGCCGGGAACGGGAAAGACAACCG
TTATTAAAGGAATTGTCGAAACGTATGCAAGGCTTAACGGTTTATCACTTGACCCTAAAGCGTACACTAAATCCAATCCA
TTTCCAATCTTACTTGTCGCACCAACTGGAAGAGCGGCAAAGCGGATGAGCGAGGCAACAGAACTGCCTGCTGTTACCAT
TCATAGGCTGCTTGGCTGGAAAGGCGGAAATGGTGGATTTGAAAAAGGAGAACATGAGCAGCTGGAAGGAGAATTGATTA
TTGTCGATGAGGTTTCAATGGTTGACATCTGGCTTGCTAATCAATTGTTAAAGGCGATCCCTAAAGGCATGCAGGTCGTT
TTTGTAGGAGATCAAGATCAATTGCCTTCAGTTGGACCTGGCCAAGTACTTAAAGACTTCTTAGATGCAGAGGTCGTTCC
AACAGTTCCGTTAACAGCGATCTATAGACAAAAGGAAGGCTCCTCGATCATCGAACTCGCCCACGAGATGAAACAAGGGA
AAATGCCTAGCGACCTGCCTGAAGCGAAGCCTGATCGACGGTTCTTTCCGTGTACAACCGATCACGTCCAGCATGTTGTG
ACACAGATTTGTGAAAATGCTATAAAAAAAGGGTATCTTGCCAGAGACATACAAGTGCTGGCTCCGATGTATAAAGGGCA
GGCTGGGATTACAGAACTCAATCGTATTCTCCAGGAGCTTTTCAACCCTAAGACAGAGCAAAAACGAGAGCTTTTATACG
GGGAACTTGCTTACCGGACAGGAGATGTTGTACTTCAGCTTGTAAACAATCCTGATGAAAATGTGTACAACGGAGACCGC
GGAGAAATTGTGGCGATTTTCTATGCAAAAGAAAATACAGAAAAACAAGATCAGGTTGTGATTAGTTTTGATGGAACAGA
GGTTGTCTACAATAAGAAAGATTTAAATCAAATTACACATGCTTATTGCTGTTCGATCCATAAATCGCAAGGAAGCGAAT
TTCCAATCGTTGTCATGCCTGTAGTACGTAATTATTCTCGGATGCTGAGGAGAAATTTAATTTATACAGGGATTACTCGG
GCAAAAAAATTCCTGCTTCTATGCGGCGAATTAAAATCCTTTCATACCGCAGTTACACGAGAAGATGAGTTAATCAGGTA
TTCGATGTTAAAAGACAAGCTTGTCTCCCTAAAACAATCTCAACAGGAATATGAGAATGGAAATGGTCAACTAACATAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-663)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-728)

AAA domain (AAA_30)

(344-538)

Helix-hairpin-helix containing domain (HHH_RecD2)

(160-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3FVY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.026

97.798

0.548

Multiple sequence alignment