Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   BPOF4_RS03920 Genome accession   NC_013791
Coordinates   785911..788280 (+) Length   789 a.a.
NCBI ID   WP_012957769.1    Uniprot ID   D3FVX1
Organism   Alkalihalophilus pseudofirmus OF4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 780911..793280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPOF4_RS03895 (BpOF4_11720) - 781245..781730 (+) 486 WP_012957763.1 COG2426 family protein -
  BPOF4_RS03900 (BpOF4_11725) - 781767..782042 (+) 276 WP_012957764.1 post-transcriptional regulator -
  BPOF4_RS22410 (BpOF4_11730) secD 782201..783505 (+) 1305 WP_012957765.1 protein translocase subunit SecD -
  BPOF4_RS22415 (BpOF4_11735) secF 783495..784439 (+) 945 WP_012957766.1 protein translocase subunit SecF -
  BPOF4_RS03910 (BpOF4_11740) - 784564..785463 (+) 900 WP_012957767.1 cation diffusion facilitator family transporter -
  BPOF4_RS03915 (BpOF4_11745) - 785494..785832 (+) 339 WP_012957768.1 LapA family protein -
  BPOF4_RS03920 (BpOF4_11750) recJ 785911..788280 (+) 2370 WP_012957769.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  BPOF4_RS03925 (BpOF4_11755) - 788283..788798 (+) 516 WP_012957770.1 adenine phosphoribosyltransferase -
  BPOF4_RS03930 (BpOF4_11760) - 789011..791197 (+) 2187 WP_012957771.1 RelA/SpoT family protein -
  BPOF4_RS03935 (BpOF4_11765) dtd 791222..791662 (+) 441 WP_012957772.1 D-aminoacyl-tRNA deacylase -
  BPOF4_RS03940 (BpOF4_11770) - 791735..791941 (+) 207 WP_022626518.1 hypothetical protein -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 88575.10 Da        Isoelectric Point: 5.0785

>NTDB_id=36131 BPOF4_RS03920 WP_012957769.1 785911..788280(+) (recJ) [Alkalihalophilus pseudofirmus OF4]
MLRPKARWKIQEQDEHKAGRLVSELGVDELVAQLLVNRGIETPEAARTFLYTKEMTYHDPYLLKGMDKAVARIKEAIANQ
EKILIFGDYDADGVSSTSVMIYTLNELGAVFDYYIPNRFTEGYGPNEPALRRAKEEGYSLVVTVDTGISAVHEANVAKEI
DLDFIVTDHHEAPPVLPEAYAIVNPKQPDCTYPFKGLAGVGVAFKVSQALLGRIPKELLDIVVIGTIADLVPLIDENRLM
AKEGLKALESTSKPGLRALMKVCGIGQDALTGDHVGFGIGPRINAAGRLDSADPAVELMITNDSNEAEHLAAEIDSLNKQ
RQSIVNTITEEAVEVVESKYPPDENDVLIIAGAGWNAGVIGIVASRLVERFYRPTIVLSIDEEKGLAKGSARSIEGFDMF
KELSKSRDILPHFGGHPMAAGLTMKEPDLNLLRERLNNQAKEVLTEEDFKPLTKIDLSTTVDRISLTVIKQLEALAPFGV
NNPTPKVMLEGVHIDQMRRIGSESNHLKMSFVQNGASLDGIGFHLGHLHDEISQTAKLSAIGTLSINEWNGHVKPQMMLE
DLAVKEWQLFDWRSIKQKRLEDRLMEIPIDDRVLIFFKESTKEELGLQLDDLRKASDLTEMSGGFEGKYVVLLDVPNTRE
ELSLLFKEQGIPSRIYTIFHQQDDSFFTTNPNRDQFKWFYAFLLKRKTFDVKKHGTDLAKHKGWSRHTIDFMSQVFLELG
FVTIDNGVLSLSDAPEKKALDASITYQRKQEQAQIENQFVYSSYEELKQWFNRVIPRNEIDERQIKETV

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=36131 BPOF4_RS03920 WP_012957769.1 785911..788280(+) (recJ) [Alkalihalophilus pseudofirmus OF4]
ATGTTAAGACCTAAGGCAAGATGGAAAATCCAAGAACAAGATGAACATAAAGCAGGTAGGCTTGTAAGCGAGCTGGGCGT
TGATGAACTTGTTGCCCAATTATTAGTTAATCGAGGCATAGAGACACCAGAAGCTGCGAGAACTTTTTTATATACAAAGG
AAATGACGTACCATGATCCCTATTTGTTAAAGGGTATGGACAAGGCTGTGGCACGAATTAAAGAAGCCATTGCAAACCAA
GAGAAGATCTTAATATTTGGTGACTATGATGCGGACGGTGTAAGCAGCACATCTGTTATGATTTACACGTTAAATGAACT
TGGTGCTGTGTTTGATTATTATATTCCTAATCGGTTCACAGAAGGCTACGGGCCTAATGAGCCGGCTTTGAGGCGTGCGA
AAGAAGAGGGGTATTCCTTAGTCGTAACAGTAGATACAGGGATTTCTGCTGTTCACGAGGCGAATGTCGCAAAAGAGATT
GATCTTGATTTTATTGTGACCGACCACCATGAGGCCCCTCCAGTTTTGCCAGAGGCATATGCTATCGTAAACCCGAAGCA
GCCAGATTGTACGTATCCTTTTAAAGGATTAGCTGGTGTAGGGGTTGCGTTCAAAGTGTCACAAGCACTCCTCGGCAGAA
TTCCTAAAGAGCTGCTTGATATTGTTGTTATCGGAACGATTGCTGATCTAGTACCGCTGATTGATGAGAATCGTTTAATG
GCTAAAGAAGGACTGAAGGCCCTAGAATCAACATCGAAGCCAGGGTTGCGTGCTTTGATGAAAGTGTGTGGAATTGGTCA
GGATGCCTTAACGGGCGATCATGTCGGCTTTGGAATTGGACCGCGGATCAATGCTGCAGGAAGACTTGATTCAGCTGATC
CGGCAGTAGAGTTGATGATTACGAATGATTCAAATGAAGCGGAACACCTAGCTGCTGAAATTGATTCTTTAAATAAACAA
CGTCAATCGATTGTTAATACGATTACTGAAGAAGCAGTCGAGGTCGTAGAATCTAAGTATCCTCCAGATGAGAATGATGT
GTTGATCATTGCAGGAGCCGGCTGGAATGCAGGTGTTATTGGGATTGTTGCCTCACGCCTTGTTGAGCGTTTCTATCGTC
CGACAATCGTATTAAGTATTGACGAAGAAAAAGGGTTAGCCAAAGGTTCAGCAAGGAGTATTGAAGGCTTTGATATGTTT
AAAGAATTATCGAAAAGCCGAGATATCCTGCCTCATTTTGGAGGACATCCAATGGCGGCTGGATTGACAATGAAAGAACC
TGATCTTAATTTACTGCGTGAACGTTTAAATAATCAGGCGAAGGAAGTTCTAACTGAGGAAGACTTCAAGCCGCTTACGA
AGATCGATTTATCCACAACGGTAGACCGCATCTCCTTAACGGTGATTAAGCAGTTAGAAGCTCTAGCTCCTTTTGGAGTG
AATAATCCAACACCAAAAGTGATGCTTGAAGGAGTTCATATCGATCAGATGCGCCGTATTGGCAGTGAGTCTAATCATCT
AAAAATGTCTTTTGTTCAAAACGGAGCGAGTCTTGATGGGATTGGCTTTCATTTGGGGCATTTACATGATGAAATCAGTC
AGACGGCAAAGCTCTCTGCGATTGGCACTCTTTCTATCAATGAATGGAATGGACATGTAAAACCGCAGATGATGCTTGAA
GATCTTGCAGTAAAGGAATGGCAGCTTTTTGACTGGCGCAGTATTAAACAAAAGAGGTTAGAAGATCGATTGATGGAAAT
TCCGATTGATGACCGTGTACTTATTTTCTTCAAAGAATCCACGAAAGAAGAGCTCGGACTCCAGCTGGATGACTTGAGAA
AAGCGAGTGATCTGACGGAGATGAGCGGAGGCTTTGAAGGGAAGTATGTGGTATTATTAGATGTGCCTAATACTCGAGAA
GAGCTTTCTCTTTTATTTAAAGAACAAGGAATACCTAGCAGGATTTATACTATTTTTCATCAACAGGACGATTCGTTTTT
TACGACAAATCCAAATCGTGATCAATTTAAATGGTTCTATGCTTTTTTATTAAAGCGTAAAACATTCGATGTGAAAAAAC
ATGGAACAGACCTTGCTAAGCATAAAGGCTGGTCTAGACATACGATCGATTTTATGTCCCAGGTGTTTTTAGAGCTCGGT
TTTGTTACAATAGACAATGGCGTTCTATCTCTAAGTGATGCACCAGAGAAAAAAGCGCTCGATGCGTCAATTACGTATCA
ACGAAAACAAGAGCAAGCACAAATAGAAAATCAATTCGTTTATTCTTCTTATGAGGAATTAAAGCAATGGTTCAATCGCG
TGATTCCCCGAAATGAAATAGATGAACGACAAATCAAGGAGACGGTGTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-438)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3FVX1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.874

99.24

0.525

Multiple sequence alignment