Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   BSNT_RS08390 Genome accession   NC_017196
Coordinates   1579046..1579495 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis subsp. natto BEST195     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1574046..1584495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSNT_RS08350 (BSNT_02477) ctaE 1574062..1574685 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  BSNT_RS08355 (BSNT_02478) ctaF 1574688..1575020 (+) 333 WP_014479710.1 cytochrome c oxidase subunit IVB -
  BSNT_RS08360 (BSNT_02479) ctaG 1575048..1575941 (+) 894 WP_014479711.1 cytochrome c oxidase assembly factor CtaG -
  BSNT_RS08365 (BSNT_02481) ylbA 1575973..1576335 (-) 363 WP_014479712.1 YugN family protein -
  BSNT_RS08370 (BSNT_02482) ylbB 1576475..1576921 (+) 447 WP_003221362.1 CBS domain-containing protein -
  BSNT_RS08375 (BSNT_02483) ylbC 1577005..1578045 (+) 1041 WP_014479713.1 CAP domain-containing protein -
  BSNT_RS08380 (BSNT_02484) ylbD 1578277..1578675 (+) 399 WP_003232233.1 YlbD family protein -
  BSNT_RS08385 (BSNT_02486) ylbE 1578691..1578930 (+) 240 WP_003232231.1 YlbE-like family protein -
  BSNT_RS08390 (BSNT_02487) ylbF 1579046..1579495 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  BSNT_RS08395 ylbG 1579550..1579822 (+) 273 WP_009967171.1 YlbG family protein -
  BSNT_RS08400 (BSNT_02491) rsmD 1580145..1580699 (+) 555 WP_033881642.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  BSNT_RS08405 (BSNT_02492) coaD 1580704..1581189 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  BSNT_RS08410 (BSNT_02493) spoVV 1581200..1582426 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  BSNT_RS08415 (BSNT_02494) ylbK 1582607..1583389 (+) 783 WP_003232221.1 patatin family protein -
  BSNT_RS08420 (BSNT_02495) sepM 1583391..1584416 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=36118 BSNT_RS08390 WP_003221370.1 1579046..1579495(+) (ylbF) [Bacillus subtilis subsp. natto BEST195]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=36118 BSNT_RS08390 WP_003221370.1 1579046..1579495(+) (ylbF) [Bacillus subtilis subsp. natto BEST195]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment