Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FCJ76_RS08775 Genome accession   NZ_CP039935
Coordinates   1674743..1675522 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain H19     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1669743..1680522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCJ76_RS08755 trmFO 1670436..1671743 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FCJ76_RS08760 xerC 1671811..1672725 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  FCJ76_RS08765 clpQ 1672738..1673283 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  FCJ76_RS08770 hslU 1673291..1674703 (+) 1413 WP_256683486.1 HslU--HslV peptidase ATPase subunit -
  FCJ76_RS08775 codY 1674743..1675522 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FCJ76_RS08780 flgB 1675902..1676291 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  FCJ76_RS08785 flgC 1676291..1676743 (+) 453 WP_024572493.1 flagellar basal body rod protein FlgC -
  FCJ76_RS08790 fliE 1676754..1677074 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  FCJ76_RS08795 fliF 1677120..1678730 (+) 1611 WP_051388163.1 flagellar basal-body MS-ring/collar protein FliF -
  FCJ76_RS08800 fliG 1678743..1679759 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  FCJ76_RS08805 fliH 1679752..1680504 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=361125 FCJ76_RS08775 WP_003220850.1 1674743..1675522(+) (codY) [Bacillus subtilis strain H19]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=361125 FCJ76_RS08775 WP_003220850.1 1674743..1675522(+) (codY) [Bacillus subtilis strain H19]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTACTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment