Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GVI48_RS07675 Genome accession   NZ_CP047697
Coordinates   1663098..1663523 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain RD1-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1658098..1668523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVI48_RS07655 ileS 1658255..1661086 (+) 2832 WP_023128442.1 isoleucine--tRNA ligase -
  GVI48_RS07660 lspA 1661079..1661588 (+) 510 WP_003102615.1 signal peptidase II -
  GVI48_RS07665 fkpB 1661581..1662021 (+) 441 WP_023090848.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  GVI48_RS07670 ispH 1662107..1663051 (+) 945 WP_023090847.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  GVI48_RS07675 comF 1663098..1663523 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  GVI48_RS07680 pilY2 1663520..1663867 (-) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  GVI48_RS07685 pilY1 1663869..1667360 (-) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  GVI48_RS07690 pilX 1667372..1667959 (-) 588 WP_023090846.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=360850 GVI48_RS07675 WP_003094721.1 1663098..1663523(-) (comF) [Pseudomonas aeruginosa strain RD1-3]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=360850 GVI48_RS07675 WP_003094721.1 1663098..1663523(-) (comF) [Pseudomonas aeruginosa strain RD1-3]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383