Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   GVI48_RS05125 Genome accession   NZ_CP047697
Coordinates   1089291..1089815 (+) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain RD1-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1084291..1094815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVI48_RS05105 - 1084361..1086829 (-) 2469 WP_003114576.1 penicillin-binding protein 1A -
  GVI48_RS05110 pilM 1087014..1088078 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  GVI48_RS05115 pilN 1088078..1088674 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  GVI48_RS05120 pilO 1088671..1089294 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  GVI48_RS05125 comL/pilP 1089291..1089815 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  GVI48_RS05130 pilQ 1089869..1092013 (+) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  GVI48_RS05135 aroK 1092025..1092543 (+) 519 WP_003095833.1 shikimate kinase AroK -
  GVI48_RS05140 aroB 1092593..1093699 (+) 1107 WP_023090926.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=360844 GVI48_RS05125 WP_003095836.1 1089291..1089815(+) (comL/pilP) [Pseudomonas aeruginosa strain RD1-3]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=360844 GVI48_RS05125 WP_003095836.1 1089291..1089815(+) (comL/pilP) [Pseudomonas aeruginosa strain RD1-3]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362