Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GVI48_RS02480 Genome accession   NZ_CP047697
Coordinates   542342..543067 (-) Length   241 a.a.
NCBI ID   WP_023100155.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain RD1-3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 537342..548067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVI48_RS02455 - 537814..538329 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  GVI48_RS02460 rarD 539019..539915 (-) 897 WP_003121788.1 EamA family transporter RarD -
  GVI48_RS02465 - 540118..541092 (-) 975 WP_003084794.1 serine/threonine protein kinase -
  GVI48_RS02470 - 541154..541912 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  GVI48_RS02475 - 541980..542300 (-) 321 WP_023088771.1 YfiM family lipoprotein -
  GVI48_RS02480 comF 542342..543067 (-) 726 WP_023100155.1 ComF family protein Machinery gene
  GVI48_RS02485 - 543206..543499 (-) 294 WP_003084806.1 hypothetical protein -
  GVI48_RS02490 - 543553..544479 (-) 927 WP_003118849.1 LysR family transcriptional regulator -
  GVI48_RS02495 - 544597..545355 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  GVI48_RS02500 - 545432..545680 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  GVI48_RS02505 - 545691..547067 (+) 1377 WP_003103320.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  GVI48_RS02510 - 547069..547947 (+) 879 WP_003103323.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27065.58 Da        Isoelectric Point: 10.8040

>NTDB_id=360826 GVI48_RS02480 WP_023100155.1 542342..543067(-) (comF) [Pseudomonas aeruginosa strain RD1-3]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPTSDVRGLHLALVDDVLTTGATAECLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=360826 GVI48_RS02480 WP_023100155.1 542342..543067(-) (comF) [Pseudomonas aeruginosa strain RD1-3]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGCCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCACCAGCGATGTTCGCGGGCTGCACCTGGCACTAGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGTGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382