Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   FAY30_RS17660 Genome accession   NZ_CP039727
Coordinates   3626534..3628897 (-) Length   787 a.a.
NCBI ID   WP_149871107.1    Uniprot ID   -
Organism   Bacillus sp. S3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3621534..3633897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAY30_RS17645 (FAY30_17645) dtd 3623142..3623591 (-) 450 WP_149871104.1 D-aminoacyl-tRNA deacylase -
  FAY30_RS17650 (FAY30_17650) - 3623608..3625803 (-) 2196 WP_149871105.1 RelA/SpoT family protein -
  FAY30_RS17655 (FAY30_17655) - 3626031..3626543 (-) 513 WP_149871106.1 adenine phosphoribosyltransferase -
  FAY30_RS17660 (FAY30_17660) recJ 3626534..3628897 (-) 2364 WP_149871107.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  FAY30_RS17665 (FAY30_17665) secDF 3628992..3631256 (-) 2265 WP_149871108.1 protein translocase subunit SecDF -
  FAY30_RS17670 (FAY30_17670) - 3631387..3631683 (-) 297 WP_149871109.1 post-transcriptional regulator -
  FAY30_RS17675 (FAY30_17675) spoVB 3631831..3633381 (+) 1551 WP_149871110.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88482.36 Da        Isoelectric Point: 5.0167

>NTDB_id=360468 FAY30_RS17660 WP_149871107.1 3626534..3628897(-) (recJ) [Bacillus sp. S3]
MLKSKTRWIVRSSDHNLVNMLANELKITPLVASLLVNRGLDTVDSARYFLFGKDEFHDPYLLKDMDLAVKRIRKAIEDQE
PILIYGDYDADGVSSTSVLMITLRELGANVQFYIPNRFTEGYGPNEQAFRQAAENGINLIITVDTGISAVHEAAVAKELG
IDLIITDHHEPGPVLPEALAIIHPKLPESIYPFRELAGVGVAFKLAHALYGEIPEHLFEIAVIGTIADLVSLKGENRLIA
KKGLEKLKVTQNIGLKAILKLSGVNPNAINEETIGFTLAPRINAVGRLEDADLAVQLILTDDPDEAQHLAEEMDTLNKTR
QSIVNSITAEAIEEVERNFPIEENKVLVVGKEGWNAGVIGIVASRLVEKYYRPTIVLNFDPNKGLAKGSARSIAGFDLFK
NLSACREILPHFGGHPMAAGMTLKLEDVAELRDRLNKLAGEQLSAEDFIPVTLLDEEIHLDDIQLSSLEELNLLSPFGMD
NPKPKVLIHNVEIGNMRKIGSEQNHLKILINEGNANLDGIGFGLGALADQISPASKISLIGELSINEWNNIRKPQIFIHD
LAIESWQLFDFRGQKRLKSMKDIVPAENRKFILFNKEIFEKIGSDLQDESILIQNLEEAKAFDGNRANIALVDFPPSKEM
LKVLLEGSQPSRIYTYFYKESSDFFSTVPTRDHFKWFYAYLMKKGPLDLKRHGDMIAKHRGWSQETLYFMTKVFSELDFV
TIYNGFITLNNQAQKRDLTDSRTYQRKQAQYALEKDLLFSSFQELKGWFDQVIQESVETEEAITEWI

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=360468 FAY30_RS17660 WP_149871107.1 3626534..3628897(-) (recJ) [Bacillus sp. S3]
ATGTTAAAGTCAAAAACAAGATGGATTGTTCGCAGTTCTGATCACAATCTAGTCAACATGCTGGCAAATGAATTGAAAAT
AACACCTCTAGTTGCGTCACTGCTTGTTAACCGTGGCTTAGATACCGTTGATTCAGCACGGTATTTTTTATTTGGGAAGG
ATGAGTTCCATGACCCATATCTTTTAAAAGATATGGACCTGGCAGTTAAGAGAATTCGGAAAGCAATCGAAGATCAAGAA
CCTATTCTTATTTATGGTGATTATGACGCTGATGGCGTTAGCAGTACATCGGTATTAATGATCACACTACGTGAGCTTGG
TGCCAATGTGCAATTTTACATCCCGAATCGTTTTACAGAAGGGTATGGCCCGAATGAACAGGCATTCCGCCAAGCTGCGG
AAAATGGAATAAATTTAATTATTACCGTGGATACTGGAATATCAGCCGTCCATGAAGCTGCCGTTGCAAAAGAGCTGGGA
ATCGATCTCATCATTACGGATCATCATGAACCAGGTCCAGTTCTGCCAGAGGCATTAGCGATTATTCACCCTAAGCTTCC
CGAAAGTATTTATCCGTTTCGTGAATTAGCAGGTGTTGGTGTCGCATTTAAGCTCGCTCATGCCCTATATGGGGAAATTC
CTGAGCATTTGTTCGAAATAGCGGTTATTGGAACGATAGCGGATTTGGTATCGTTAAAAGGCGAAAATCGTTTAATAGCC
AAAAAAGGTCTAGAAAAACTGAAAGTTACGCAAAATATTGGTCTTAAAGCCATCTTAAAATTATCCGGTGTCAATCCTAA
TGCGATAAATGAAGAAACGATTGGCTTCACGCTTGCGCCAAGAATTAATGCTGTCGGCAGATTAGAAGATGCTGACTTAG
CTGTTCAGCTGATACTGACAGATGATCCTGATGAGGCACAGCATTTAGCGGAAGAAATGGATACCTTAAATAAGACTAGG
CAATCGATTGTCAATTCAATCACAGCTGAAGCCATTGAAGAGGTTGAAAGGAATTTCCCGATTGAGGAAAATAAGGTCCT
TGTTGTGGGGAAAGAAGGCTGGAACGCCGGTGTTATTGGTATTGTCGCTTCAAGGCTAGTTGAAAAATACTATCGGCCAA
CAATCGTGTTAAATTTTGACCCTAATAAAGGGTTAGCGAAGGGCTCTGCCAGGAGTATTGCCGGATTTGATTTATTTAAA
AATTTATCTGCCTGCCGAGAGATTCTCCCGCACTTTGGCGGACATCCAATGGCAGCAGGCATGACCTTGAAGCTTGAAGA
TGTTGCCGAGCTTAGGGATCGATTAAATAAGCTTGCAGGCGAGCAATTATCTGCTGAGGATTTTATACCTGTAACACTAC
TTGACGAGGAAATCCATCTGGATGATATCCAACTATCTTCTTTAGAAGAATTGAATTTGCTTTCTCCTTTTGGCATGGAC
AACCCTAAGCCAAAAGTCTTAATTCATAATGTCGAAATTGGCAATATGAGAAAAATTGGCAGTGAGCAAAACCATTTAAA
GATTTTAATCAATGAAGGTAATGCAAACCTTGACGGAATAGGCTTTGGGTTAGGGGCATTAGCCGACCAAATTTCCCCAG
CATCAAAAATTTCATTAATTGGAGAATTATCTATTAATGAATGGAACAATATACGTAAACCACAAATTTTTATCCATGAC
CTCGCTATAGAATCATGGCAGTTATTTGATTTTCGCGGACAAAAGAGACTCAAAAGTATGAAAGATATTGTCCCAGCTGA
AAACCGGAAATTCATCCTTTTTAATAAAGAGATTTTTGAAAAAATAGGCTCTGATCTGCAAGATGAGTCCATTCTTATTC
AAAATCTTGAAGAGGCAAAGGCTTTTGATGGTAATCGGGCAAATATCGCTTTAGTTGATTTTCCCCCTTCAAAGGAGATG
CTAAAAGTCTTATTAGAAGGTAGTCAGCCATCCAGAATTTATACTTATTTTTATAAAGAATCCAGTGATTTTTTCAGTAC
GGTTCCGACTCGCGACCATTTTAAATGGTTTTATGCCTACCTCATGAAAAAAGGCCCGCTTGACCTGAAAAGACATGGCG
ATATGATTGCCAAGCATCGCGGCTGGTCGCAGGAAACTCTTTATTTTATGACAAAGGTGTTTTCTGAACTGGATTTTGTT
ACAATATACAATGGATTTATTACTTTGAACAATCAAGCGCAAAAGCGTGATTTAACTGACTCAAGAACCTATCAAAGGAA
ACAGGCACAATATGCCCTTGAAAAGGATTTGTTGTTTTCATCCTTTCAGGAATTAAAAGGCTGGTTCGATCAAGTTATTC
AAGAGTCAGTTGAAACTGAGGAGGCAATTACAGAATGGATTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(567-769)

RecJ OB domain (RecJ_OB)

(455-560)

DHHA1 domain (DHHA1)

(317-438)

DHH family (DHH)

(82-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.612

99.619

0.554

Multiple sequence alignment