Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FAY30_RS09175 Genome accession   NZ_CP039727
Coordinates   1905180..1905959 (+) Length   259 a.a.
NCBI ID   WP_149869591.1    Uniprot ID   -
Organism   Bacillus sp. S3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1900180..1910959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAY30_RS09160 (FAY30_09160) trmFO 1901654..1902961 (+) 1308 WP_149869588.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FAY30_RS09165 (FAY30_09165) hslV 1903119..1903661 (+) 543 WP_149869589.1 ATP-dependent protease subunit HslV -
  FAY30_RS09170 (FAY30_09170) hslU 1903682..1905085 (+) 1404 WP_149869590.1 HslU--HslV peptidase ATPase subunit -
  FAY30_RS09175 (FAY30_09175) codY 1905180..1905959 (+) 780 WP_149869591.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FAY30_RS09180 (FAY30_09180) rpsB 1906149..1906853 (+) 705 WP_149869592.1 30S ribosomal protein S2 -
  FAY30_RS09185 (FAY30_09185) tsf 1907110..1907994 (+) 885 WP_149869593.1 translation elongation factor Ts -
  FAY30_RS09190 (FAY30_09190) pyrH 1908117..1908842 (+) 726 WP_149869594.1 UMP kinase -
  FAY30_RS09195 (FAY30_09195) frr 1908842..1909399 (+) 558 WP_149869595.1 ribosome recycling factor -
  FAY30_RS09200 (FAY30_09200) - 1909661..1910437 (+) 777 WP_149869596.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29221.50 Da        Isoelectric Point: 4.8353

>NTDB_id=360457 FAY30_RS09175 WP_149869591.1 1905180..1905959(+) (codY) [Bacillus sp. S3]
MDLLTKTRKINVLLQKAAGKPVNFKEMSETLSETIESNVYIVSRRGKLLGFSIYQQIENERMKKMFEDRQFPEEYTNGLF
NIQETSSNLGIESQYTAFPVENRELFHEGLTTIVPIIGGGERLGTLILARLQEKFQDDELILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGHEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLVELDKLRSN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=360457 FAY30_RS09175 WP_149869591.1 1905180..1905959(+) (codY) [Bacillus sp. S3]
ATGGATTTACTTACAAAAACGAGAAAAATTAATGTTTTATTGCAAAAAGCTGCTGGAAAACCAGTGAATTTCAAGGAAAT
GTCAGAGACATTAAGTGAAACAATTGAATCGAATGTTTACATTGTCAGCCGCCGCGGGAAACTTTTAGGATTTTCAATTT
ATCAGCAAATTGAAAACGAACGAATGAAGAAAATGTTTGAAGACAGACAATTTCCTGAAGAATACACAAATGGTTTGTTT
AATATTCAAGAAACTTCATCAAATCTTGGTATTGAAAGCCAATATACTGCTTTCCCTGTGGAAAACAGAGAATTATTCCA
TGAAGGCTTGACAACAATTGTCCCAATTATCGGAGGCGGGGAACGATTAGGCACATTAATCCTTGCCAGATTACAAGAAA
AATTCCAGGATGATGAATTGATTCTTGCGGAATATGGTGCAACTGTAGTAGGTATGGAGATTTTACGTGAAAAAGCAGAA
GAGATTGAGGAAGAAGCTCGCAGCAAGGCCGTTGTGCAAATGGCTATCAGTTCATTGTCTTATAGTGAACTAGAAGCCAT
TGAGCATATTTTTGAAGAGTTAAATGGTCATGAAGGCCTATTAGTTGCTTCAAAAATTGCTGACCGTGTTGGTATTACAC
GTTCCGTAATTGTCAATGCATTAAGAAAACTTGAAAGTGCAGGGGTTATCGAATCCCGTTCTCTTGGTATGAAAGGAACG
TACATCAAAGTATTAAATGATAAGTTTTTAGTTGAACTTGATAAATTAAGATCGAATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

84.17

100

0.842
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.964

95.367

0.448

Multiple sequence alignment