Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   GTW28_RS06535 Genome accession   NZ_CP047485
Coordinates   1240204..1241121 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain BJQ0005     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1235204..1246121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTW28_RS06520 (GTW28_06520) trpS 1235784..1236776 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  GTW28_RS06525 (GTW28_06525) oppA 1237520..1239157 (+) 1638 WP_015252360.1 oligopeptide ABC transporter substrate-binding protein OppA -
  GTW28_RS06530 (GTW28_06530) oppB 1239265..1240200 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  GTW28_RS06535 (GTW28_06535) amiD 1240204..1241121 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  GTW28_RS06540 (GTW28_06540) oppD 1241126..1242202 (+) 1077 WP_072173823.1 oligopeptide ABC transporter ATP-binding protein OppD -
  GTW28_RS06545 (GTW28_06545) oppF 1242204..1243121 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  GTW28_RS06550 (GTW28_06550) yjbB 1243229..1244446 (+) 1218 WP_080478438.1 MFS transporter -
  GTW28_RS06555 (GTW28_06555) yjbC 1244611..1245189 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  GTW28_RS06560 (GTW28_06560) spx 1245370..1245765 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=359864 GTW28_RS06535 WP_003232954.1 1240204..1241121(+) (amiD) [Bacillus subtilis strain BJQ0005]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=359864 GTW28_RS06535 WP_003232954.1 1240204..1241121(+) (amiD) [Bacillus subtilis strain BJQ0005]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCGAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTTGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGTGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364