Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   I33_RS05995 Genome accession   NC_017195
Coordinates   1195615..1196532 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis subsp. subtilis str. RO-NN-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1190615..1201532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I33_RS05980 (I33_1274) trpS 1191195..1192187 (-) 993 WP_014476431.1 tryptophan--tRNA ligase -
  I33_RS05985 (I33_1275) oppA 1192931..1194568 (+) 1638 WP_014476432.1 oligopeptide ABC transporter substrate-binding protein OppA -
  I33_RS05990 (I33_1276) oppB 1194676..1195611 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  I33_RS05995 (I33_1277) amiD 1195615..1196532 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  I33_RS06000 (I33_1278) oppD 1196537..1197613 (+) 1077 WP_077670618.1 oligopeptide ABC transporter ATP-binding protein OppD -
  I33_RS06005 (I33_1279) oppF 1197615..1198532 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  I33_RS06010 (I33_1280) yjbB 1198640..1199857 (+) 1218 WP_080009875.1 MFS transporter -
  I33_RS06015 (I33_1281) yjbC 1200021..1200599 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  I33_RS06020 (I33_1282) spx 1200780..1201175 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=35955 I33_RS05995 WP_003232954.1 1195615..1196532(+) (amiD) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=35955 I33_RS05995 WP_003232954.1 1195615..1196532(+) (amiD) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCCGCTGTTCTTGATTTGCTGATCGGTGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCATCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCAATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364