Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BDP_RS00720 Genome accession   NC_013714
Coordinates   188453..190210 (+) Length   585 a.a.
NCBI ID   WP_003837877.1    Uniprot ID   D2Q790
Organism   Bifidobacterium dentium Bd1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 183453..195210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BDP_RS00695 (BDP_0147) - 183490..184404 (-) 915 WP_003837888.1 thiazole synthase -
  BDP_RS00700 (BDP_0148) thiF 184435..185148 (-) 714 WP_003837886.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  BDP_RS00705 (BDP_0149) thiS 185397..185591 (-) 195 WP_012901796.1 sulfur carrier protein ThiS -
  BDP_RS00710 (BDP_0151) - 186456..187481 (+) 1026 WP_033489168.1 aldo/keto reductase -
  BDP_RS00715 (BDP_0152) - 187645..188145 (+) 501 WP_003837879.1 MarR family winged helix-turn-helix transcriptional regulator -
  BDP_RS00720 (BDP_0153) rcrP 188453..190210 (+) 1758 WP_003837877.1 ABC transporter ATP-binding protein Regulator
  BDP_RS00725 (BDP_0154) rcrQ 190212..192050 (+) 1839 WP_003844716.1 ABC transporter ATP-binding protein Regulator
  BDP_RS00730 (BDP_0155) - 192186..193325 (-) 1140 WP_003837874.1 ATP-binding protein -
  BDP_RS00735 (BDP_0156) - 193503..194549 (-) 1047 WP_003837871.1 FAD:protein FMN transferase -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64298.31 Da        Isoelectric Point: 5.0934

>NTDB_id=35938 BDP_RS00720 WP_003837877.1 188453..190210(+) (rcrP) [Bifidobacterium dentium Bd1]
MLRIMRYLSKAEIGQMLIALVSIIGQIWLDLTLPDYMSNITELVETPGSSMSDIWVAGGKMLAISLGSAACAVVTGYIAA
RVGASFSQRLRSLEFNKVESFGPAEMNRFSTASLITRSTNDITQIQMFITMGLMMIVKSPIMAVWAVCKIAGDGFEWTLA
TGIAVAVLLVAIGILMALVMPKFKSMQRLTDNINLVARENLTGLRVVRAYNAEDYQESKFTQANKELTETQLFTNRAMAV
MMPLMNTIMNGLMLAVYWIGAYLIEAADATDKLTTFANMVVFSSYSVQVIMSFLLMSMVFVLWPRADVSAQRVLEVIDTE
PMVVDGSRTAGKSGMEGDIEFRNVSFAYPDSREAMLEGISFKAAKGQTVAFIGSTGSGKSSLINLVPRFYDATQGEVLVD
GVNVRDYTLKALRDKIGYVPQQAFLFKGTIAGNVAYGDTELRERDVKDACDVAQATEFIDKKEHGYESDISQGGANVSGG
QKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALAKEAKDSTKLIVAQRIGTIMDADRIVVLDEGRVVGQGTHRE
LLETCEVYRQIAQSQLSEDELKGGR

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=35938 BDP_RS00720 WP_003837877.1 188453..190210(+) (rcrP) [Bifidobacterium dentium Bd1]
ATGCTTCGCATCATGCGATACCTCTCCAAAGCGGAGATAGGCCAGATGCTCATAGCGTTGGTCAGCATCATCGGTCAGAT
CTGGCTTGATCTGACCCTGCCGGACTACATGTCCAACATCACCGAACTCGTTGAAACTCCGGGCAGCAGCATGTCCGACA
TCTGGGTGGCAGGCGGCAAAATGCTCGCCATCTCACTGGGATCCGCGGCCTGCGCCGTCGTGACCGGCTACATCGCCGCA
CGCGTGGGCGCCTCATTCAGCCAAAGGCTACGCTCGCTGGAGTTCAACAAGGTCGAAAGCTTCGGACCGGCGGAAATGAA
CCGCTTCTCCACTGCGTCGCTCATCACCCGCTCCACGAACGACATCACGCAGATCCAGATGTTCATCACCATGGGCCTGA
TGATGATCGTCAAGTCGCCGATCATGGCCGTGTGGGCAGTATGCAAGATTGCGGGCGACGGATTCGAATGGACGCTCGCC
ACTGGCATCGCCGTGGCGGTACTGCTGGTCGCGATCGGCATTCTGATGGCGCTGGTCATGCCGAAATTCAAGTCCATGCA
GCGTCTGACGGACAACATCAACCTGGTGGCGCGCGAAAACCTGACCGGCCTGCGCGTGGTGCGCGCCTACAACGCCGAAG
ACTATCAGGAATCGAAATTCACGCAGGCCAACAAGGAACTGACCGAAACCCAGCTGTTCACCAACCGTGCCATGGCGGTC
ATGATGCCGCTGATGAACACCATCATGAACGGCCTGATGCTCGCCGTCTACTGGATCGGCGCATACCTGATCGAAGCGGC
CGACGCCACCGACAAACTCACCACCTTCGCGAACATGGTGGTGTTCTCCAGCTATTCCGTGCAGGTGATCATGAGCTTCC
TGCTGATGAGCATGGTATTCGTGCTGTGGCCGCGCGCCGACGTATCCGCACAGCGCGTGCTTGAAGTGATCGACACCGAG
CCGATGGTCGTAGATGGCAGCCGGACTGCGGGAAAGTCCGGCATGGAAGGCGACATCGAATTCCGCAACGTGAGCTTCGC
CTACCCGGATTCGCGCGAGGCCATGCTGGAAGGCATCAGCTTCAAAGCCGCAAAAGGTCAGACGGTCGCGTTCATCGGCT
CGACCGGCTCCGGCAAATCGTCGCTGATCAATCTGGTGCCGCGCTTCTACGACGCCACCCAAGGCGAAGTGCTCGTCGAC
GGCGTGAACGTGCGCGACTACACGCTCAAGGCATTGCGCGACAAGATCGGCTACGTGCCGCAACAGGCGTTCCTGTTCAA
GGGCACCATCGCCGGCAATGTGGCATACGGCGACACCGAACTGCGCGAACGGGACGTGAAGGACGCCTGCGATGTCGCGC
AGGCCACGGAATTCATCGACAAGAAGGAACATGGCTACGAATCCGACATTTCGCAAGGCGGCGCCAACGTGTCCGGCGGG
CAGAAGCAACGACTGTCAATCGCAAGGGCCGTGTATCGGCATCCGGAAATCCTCATCTTCGACGACTCCTTCTCCGCACT
TGACTTCAAAACGGACCGTGCCGTACGCGACGCGCTCGCGAAGGAGGCCAAGGATTCCACGAAACTGATCGTCGCGCAGC
GCATCGGCACCATCATGGATGCCGACCGCATCGTCGTGCTCGACGAAGGCAGGGTGGTCGGACAGGGCACGCACCGTGAA
CTGCTCGAGACCTGCGAGGTGTATCGGCAGATCGCGCAGTCGCAGCTGAGCGAAGACGAACTGAAGGGAGGCCGCTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(16-293)

ABC transporter (ABC_tran)

(356-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D2Q790

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

49.833

100

0.511

Multiple sequence alignment