Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   GSY53_RS15905 Genome accession   NZ_CP047325
Coordinates   3066041..3066490 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain GOT9     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3061041..3071490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSY53_RS15865 (GSY53_15865) ctaE 3061058..3061681 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  GSY53_RS15870 (GSY53_15870) ctaF 3061684..3062016 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  GSY53_RS15875 (GSY53_15875) ctaG 3062043..3062936 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  GSY53_RS15880 (GSY53_15880) ylbA 3062968..3063330 (-) 363 WP_003232238.1 YugN family protein -
  GSY53_RS15885 (GSY53_15885) ylbB 3063470..3063916 (+) 447 WP_003221362.1 CBS domain-containing protein -
  GSY53_RS15890 (GSY53_15890) ylbC 3064000..3065040 (+) 1041 WP_003245434.1 CAP domain-containing protein -
  GSY53_RS15895 (GSY53_15895) ylbD 3065272..3065670 (+) 399 WP_003232233.1 YlbD family protein -
  GSY53_RS15900 (GSY53_15900) ylbE 3065686..3065925 (+) 240 WP_003232231.1 YlbE-like family protein -
  GSY53_RS15905 (GSY53_15905) ylbF 3066041..3066490 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  GSY53_RS15910 (GSY53_15910) ylbG 3066545..3066817 (+) 273 WP_009967171.1 YlbG family protein -
  GSY53_RS15915 (GSY53_15915) rsmD 3067140..3067694 (+) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GSY53_RS15920 (GSY53_15920) coaD 3067699..3068184 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  GSY53_RS15925 (GSY53_15925) spoVV 3068195..3069421 (-) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  GSY53_RS15930 (GSY53_15930) ylbK 3069602..3070384 (+) 783 WP_003232221.1 patatin family protein -
  GSY53_RS15935 (GSY53_15935) sepM 3070386..3071411 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=359366 GSY53_RS15905 WP_003221370.1 3066041..3066490(+) (ylbF) [Bacillus subtilis strain GOT9]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=359366 GSY53_RS15905 WP_003221370.1 3066041..3066490(+) (ylbF) [Bacillus subtilis strain GOT9]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1