Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   GSY53_RS13980 Genome accession   NZ_CP047325
Coordinates   2718182..2719099 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain GOT9     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2713182..2724099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSY53_RS13965 (GSY53_13965) trpS 2713762..2714754 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  GSY53_RS13970 (GSY53_13970) oppA 2715498..2717135 (+) 1638 WP_003232957.1 oligopeptide ABC transporter substrate-binding protein OppA -
  GSY53_RS13975 (GSY53_13975) oppB 2717243..2718178 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  GSY53_RS13980 (GSY53_13980) amiD 2718182..2719099 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  GSY53_RS13985 (GSY53_13985) oppD 2719104..2720180 (+) 1077 WP_014906294.1 oligopeptide ABC transporter ATP-binding protein OppD -
  GSY53_RS13990 (GSY53_13990) oppF 2720182..2721099 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  GSY53_RS13995 (GSY53_13995) yjbB 2721206..2722423 (+) 1218 WP_010886478.1 MFS transporter -
  GSY53_RS14000 (GSY53_14000) yjbC 2722587..2723165 (+) 579 WP_003244921.1 GNAT family N-acetyltransferase -
  GSY53_RS14005 (GSY53_14005) spx 2723346..2723741 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=359350 GSY53_RS13980 WP_003232954.1 2718182..2719099(+) (amiD) [Bacillus subtilis strain GOT9]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=359350 GSY53_RS13980 WP_003232954.1 2718182..2719099(+) (amiD) [Bacillus subtilis strain GOT9]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGAA
GAACAGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTATTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364