Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   E8M06_RS06945 Genome accession   NZ_CP039462
Coordinates   1411417..1412256 (-) Length   279 a.a.
NCBI ID   WP_136581401.1    Uniprot ID   -
Organism   Streptococcus suis strain WUSS351     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1406417..1417256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M06_RS06930 (E8M06_06940) uidA 1406778..1408577 (-) 1800 WP_136581400.1 beta-glucuronidase -
  E8M06_RS06935 (E8M06_06945) - 1408593..1409621 (-) 1029 WP_105143396.1 sugar kinase -
  E8M06_RS06940 (E8M06_06950) - 1409677..1411230 (-) 1554 WP_105143397.1 MFS transporter -
  E8M06_RS06945 (E8M06_06955) endA 1411417..1412256 (-) 840 WP_136581401.1 DNA/RNA non-specific endonuclease Machinery gene
  E8M06_RS06950 (E8M06_06960) - 1412286..1412477 (-) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  E8M06_RS06955 (E8M06_06965) murA 1412470..1413753 (-) 1284 WP_024413088.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  E8M06_RS06960 (E8M06_06970) - 1413777..1414001 (-) 225 WP_024387485.1 DUF1146 family protein -
  E8M06_RS06965 (E8M06_06975) - 1414061..1414477 (-) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  E8M06_RS06970 (E8M06_06980) atpD 1414487..1415893 (-) 1407 WP_002936008.1 F0F1 ATP synthase subunit beta -
  E8M06_RS06975 (E8M06_06985) - 1415913..1416791 (-) 879 WP_002939795.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30273.45 Da        Isoelectric Point: 5.7088

>NTDB_id=358847 E8M06_RS06945 WP_136581401.1 1411417..1412256(-) (endA) [Streptococcus suis strain WUSS351]
MAKKNVRKQAMSLLSLLATIVVVAGGYLLSDNKSSNIADYSYYVNQSKASESTPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQVYDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYYSGEITVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=358847 E8M06_RS06945 WP_136581401.1 1411417..1412256(-) (endA) [Streptococcus suis strain WUSS351]
ATGGCGAAGAAAAATGTAAGAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTCGTAGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACATTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGCGAGAGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAACAACTGGGGAATTCGATTGAATGGAATGGTGCT
GGAGCATTTATTATTAACGGGAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
AACAGTCCAGGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCCAAATCTACACGTCAGTATAAGGACCGTGAAG
AAACAGGAAATGGTCGGACTTCTTGGACACCTGCGGGTTGGCATCAGGTCTATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGCTTCGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGTCATCTAGAGGCAAAAGCAGCAGATGGAAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGTGGTCTCAG
TATCAACTATTATAGTGGGGAAATTACGGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

71.186

84.588

0.602
  endA Streptococcus pneumoniae D39

71.186

84.588

0.602
  endA Streptococcus pneumoniae R6

71.186

84.588

0.602
  endA Streptococcus pneumoniae TIGR4

71.186

84.588

0.602

Multiple sequence alignment